too long lines were shrinked: [1144/1154] /usr/bin/x86_64-pc-linux-gnu-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DTMPI_EXPORTS -DTMPI_USE_VISIBILITY -DUSE_STD_INTTYPES_H -D_UNICODE -Dlibgromacs_EXPORTS -I/var/tmp/portage/sci-chemistry/gromacs-2023_rc1/work/gromacs-2023-rc1/src/include -I/var/tmp/portage/sci-chemistry/gromacs-2023_rc1/ [1145/1154] : && /usr/bin/x86_64-pc-linux-gnu-g++ -fPIC -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -shared -Wl,-soname,libgromacs.so.8 -o lib/libgromacs.so.8.0.0 src/gromacs/CMakeFiles/thread_mpi.dir/__/external/thread_mpi/src/errh [1146/1154] /usr/bin/cmake -E cmake_symlink_library lib/libgromacs.so.8.0.0 lib/libgromacs.so.8 lib/libgromacs.so && : [1147/1154] : && /usr/bin/x86_64-pc-linux-gnu-g++ -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_o FAILED: bin/gmx : && /usr/bin/x86_64-pc-linux-gnu-g++ -pipe -march=native -fno-diagnostics-color -O2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/programs/CMakeFiles/gmx_objlib.dir/legacymodules.cpp.o src/programs/CMakeFiles/mdrun_objlib.dir/md /usr/lib/gcc/x86_64-pc-linux-gnu/12/../../../../x86_64-pc-linux-gnu/bin/ld: lib/libgromacs.so.8.0.0: undefined reference to `mu::ParserBase::DefineVar(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, double*)' /usr/lib/gcc/x86_64-pc-linux-gnu/12/../../../../x86_64-pc-linux-gnu/bin/ld: lib/libgromacs.so.8.0.0: undefined reference to `mu::ParserBase::SetExpr(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)' collect2: error: ld returned 1 exit status ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1-j4-20221220-180004 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-12 * clang/llvm (if any): /usr/lib/llvm/15 15.0.6 Python 3.10.9 Available Ruby profiles: [1] ruby27 * Available Rust versions: [1] rust-bin-1.66.0 * The following VMs are available for generation-2: *) Eclipse Temurin JDK 17.0.5_p8 [openjdk-bin-17] Available Java Virtual Machines: [1] openjdk-bin-17 system-vm The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli (if any): HEAD of ::gentoo commit 339b86324729a2587fa61a1a15a8a27d316e1a4b Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Tue Dec 20 22:17:09 2022 +0000 2022-12-20 22:17:08 UTC emerge -qpvO sci-chemistry/gromacs [ebuild N ] sci-chemistry/gromacs-2023_rc1 USE="custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -blas -build-manual -clang -clang-cuda (-cuda) -double-precision -lapack -mkl -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_10 -python3_8 -python3_9 -python3_11"
Created attachment 844411 [details] emerge-info.txt
Created attachment 844413 [details] emerge-history.txt
Created attachment 844415 [details] environment
Created attachment 844417 [details] etc.portage.tar.bz2
Created attachment 844419 [details] logs.tar.bz2
Created attachment 844421 [details] sci-chemistry:gromacs-2023_rc1:20221220-231709.log.bz2
Created attachment 844423 [details] temp.tar.bz2
Should be fixed upstream
