Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 882647 - sci-libs/scikit-learn-1.1.2: build failure with dev-python/setuptools-65.0.0
Summary: sci-libs/scikit-learn-1.1.2: build failure with dev-python/setuptools-65.0.0
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
: 882411 882635 882677 882681 882683 (view as bug list)
Depends on:
Blocks:
 
Reported: 2022-11-24 07:39 UTC by Sam James
Modified: 2022-11-24 20:22 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (file_882647.txt,3.97 KB, text/plain)
2022-11-24 07:39 UTC, Sam James
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-11-24 07:39:00 UTC
Created attachment 836095 [details]
build.log

```
python3.8 setup.py build_ext -j 32
Partial import of sklearn during the build process.
Traceback (most recent call last):
  File "setup.py", line 329, in <module>
    setup_package()
  File "setup.py", line 309, in setup_package
    from numpy.distutils.core import setup
  File "/usr/lib/python3.8/site-packages/numpy/distutils/__init__.py", line 26, in <module>
    from . import ccompiler
  File "/usr/lib/python3.8/site-packages/numpy/distutils/ccompiler.py", line 20, in <module>
    from numpy.distutils import log
  File "/usr/lib/python3.8/site-packages/numpy/distutils/log.py", line 4, in <module>
    from distutils.log import Log as old_Log
ImportError: cannot import name 'Log' from 'distutils.log' (/usr/lib/python3.8/site-packages/setuptools/_distutils/log.py)
 * ERROR: sci-libs/scikit-learn-1.1.2::gentoo failed (compile phase):
 *   (no error message)
```

----

Portage 3.0.39 (python 3.11.0-final-0, default/linux/amd64/17.1/hardened, gcc-12, glibc-2.36-r6, 5.15.77-gentoo-dist-hardened x86_64)
=================================================================
System uname: Linux-5.15.77-gentoo-dist-hardened-x86_64-AMD_Ryzen_9_3950X_16-Core_Processor-with-glibc2.36
KiB Mem:    65765024 total,   4125732 free
KiB Swap:    8290300 total,   4375668 free
Timestamp of repository gentoo: Wed, 23 Nov 2022 07:01:54 +0000
Head commit of repository gentoo: f10c4297812327e593a5622882c07c3a8c090991

Timestamp of repository emacs: Wed, 23 Nov 2022 01:37:47 +0000
Head commit of repository emacs: c4eb12d889e857f2d9887391a0f497be0ad6e5a5

Timestamp of repository kde: Wed, 16 Nov 2022 21:16:45 +0000
Head commit of repository kde: db2b43d0bb54690186fa173d3e2295b09f9e5194

Timestamp of repository qt: Mon, 21 Nov 2022 13:16:47 +0000
Head commit of repository qt: 0bffd920e32aa057e2fc07f95c1b7e60329b7d4b

Timestamp of repository sam_c: Wed, 23 Nov 2022 01:38:05 +0000
Head commit of repository sam_c: 08384428ba381a9e47647be73088658dd82b4b42

Timestamp of repository steam-overlay: Wed, 23 Nov 2022 01:37:51 +0000
Head commit of repository steam-overlay: 26389d14ba8b788843a8f82efae21701bda3d133

sh dash 0.5.11.5
ld GNU ld (Gentoo 2.39 p5) 2.39.0
ccache version 4.7.3 [disabled]
app-misc/pax-utils:        1.3.5::gentoo
app-shells/bash:           5.2_p9-r1::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.36.0-r1::gentoo
dev-lang/python:           2.7.18_p16::gentoo, 3.8.15_p3::gentoo, 3.9.15_p3::gentoo, 3.10.8_p3::gentoo, 3.11.0_p2::gentoo
dev-lang/rust:             1.65.0::gentoo
dev-util/ccache:           4.7.3::gentoo
dev-util/cmake:            3.25.0::gentoo
dev-util/meson:            0.64.1::gentoo
sys-apps/baselayout:       2.9::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-apps/systemd:          252.1::gentoo
sys-devel/autoconf:        2.13-r7::gentoo, 2.69-r7::gentoo, 2.71-r5::gentoo, 9999::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.39-r4::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/clang:           14.0.6-r1::gentoo, 15.0.5::gentoo, 16.0.0_pre20221120::gentoo
sys-devel/gcc:             9.5.0::gentoo, 10.4.1_p20221117::gentoo, 11.3.1_p20221118::gentoo, 12.2.1_p20221119::gentoo, 13.0.0_pre20221120::gentoo
sys-devel/gcc-config:      2.8::gentoo
sys-devel/libtool:         2.4.7::gentoo
sys-devel/lld:             14.0.6-r1::gentoo, 15.0.5::gentoo, 16.0.0_pre20221120::gentoo
sys-devel/llvm:            14.0.6-r2::gentoo, 15.0.5::gentoo, 16.0.0_pre20221120::gentoo
sys-devel/make:            4.4::gentoo
sys-kernel/linux-headers:  6.0::gentoo (virtual/os-headers)
sys-libs/glibc:            2.36-r6::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000
    eclass-overrides: sam_c
    sync-git-verify-commit-signature: yes
    sync-git-clone-extra-opts: -b stable -c gc.reflogExpire=0 -c gc.reflogExpireUnreachable=0 -c gc.rerereresolved=0 -c gc.rerereunresolved=0 -c gc.pruneExpire=now

crossdev
    location: /var/db/repos/crossdev
    masters: gentoo
    eclass-overrides: sam_c

emacs
    location: /var/db/repos/emacs
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/emacs.git
    masters: gentoo
    eclass-overrides: sam_c

kde
    location: /var/db/repos/kde
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/kde.git
    masters: gentoo
    eclass-overrides: sam_c

local
    location: /var/db/repos/local
    masters: gentoo
    eclass-overrides: sam_c

qt
    location: /var/db/repos/qt
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/qt.git
    masters: gentoo
    eclass-overrides: sam_c

sam_c
    location: /var/db/repos/sam_c
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/sam_c.git
    masters: gentoo
    eclass-overrides: sam_c

steam-overlay
    location: /var/db/repos/steam-overlay
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/steam-overlay.git
    masters: gentoo
    eclass-overrides: sam_c

test
    location: /var/db/repos/test
    masters: gentoo
    eclass-overrides: sam_c

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -Wreturn-type"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.1/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -Wreturn-type -D_GLIBCXX_ASSERTIONS"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --with-bdeps=y --complete-graph --deep --dynamic-deps=n --changed-deps=n --usepkg-exclude sys-fs/zfs --usepkg-exclude sys-fs/zfs-kmod --usepkg=y --implicit-system-deps=n --jobs=4 --load-average 32"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR XDG_STATE_HOME"
FCFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -Wreturn-type"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg cgroup clean-logs config-protect-if-modified distlocks fixlafiles ipc-sandbox mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -Wreturn-type"
GENTOO_MIRRORS="http://mirror.bytemark.co.uk/gentoo/ http://www.mirrorservice.org/sites/distfiles.gentoo.org/ http://mirrors.soeasyto.com/distfiles.gentoo.org/"
LANG="en_GB.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-z,pack-relative-relocs"
LINGUAS="en en_GB"
PKGDIR="/var/cache/binpkgs"
PORTAGE_BUNZIP2_COMMAND="lbunzip2"
PORTAGE_COMPRESS="xz"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RUSTFLAGS="-C target-cpu=native"
SHELL="/bin/bash"
USE="PIC X a52 aac acl acpi activities aes alsa amd64 avx avx2 bash-completion bluetooth branding bzip2 cairo caps cdda cdr clang cli crypt dbus declarative dist-kernel dri dts dvd dvdr emacs encode exif f16c filecaps firewalld flac fma3 fortran freetype gdbm gif gmp gpm graphite gtk gui hardened harfbuzz hunspell iconv icu ipv6 jit jpeg kde kdesu kwallet lcms libglvnd libnotify libtirpc llvm-libunwind lto mad mmx mmxext mng mp3 mp4 mpeg multilib ncurses nftables nls nptl ogg opengl openmp pam pango pclmul pcre pdf pgo pie pipewire plasma png policykit popcnt ppds pulseaudio qml qt5 rdrand readline screencast sdl seccomp semantic-desktop sha spell sse sse2 sse3 sse4_1 sse4_2 sse4a ssl ssp ssse3 startup-notification svg system-av1 system-binutils system-boost system-bootstrap system-cairo system-clang system-digest system-ffmpeg system-harfbuzz system-heimdal system-icu system-jpeg system-leveldb system-libevent system-libs system-libvpx system-libyaml system-llvm system-lz4 system-mitkrb5 system-sqlite system-ssl system-tbb system-uulib system-webp system-zlib systemd test-rust tiff truetype udev udisks unicode upower usb verify-sig vorbis vulkan wayland widgets x264 xattr xcb xml xtpax xv xvid zfs zlib zsh-completion" ABI_X86="32 64" ADA_TARGET="gnat_2021" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" L10N="en en-GB" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="X86 AArch64 AMDGPU ARM AVR BPF Hexagon Lanai MSP430 Mips NVPTX PowerPC RISCV Sparc SystemZ WebAssembly XCore" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10 pypy3 python3_11 python3_8 python3_9" QEMU_USER_TARGETS="aarch64 aarch64_be alpha armeb hppa m68k ppc64le sparc64" RUBY_TARGETS="ruby31" USERLAND="GNU" VIDEO_CARDS="amdgpu radeonsi radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 2 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-11-24 09:22:12 UTC
*** Bug 882683 has been marked as a duplicate of this bug. ***
Comment 3 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-11-24 09:22:28 UTC
*** Bug 882681 has been marked as a duplicate of this bug. ***
Comment 4 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-11-24 09:22:33 UTC
*** Bug 882677 has been marked as a duplicate of this bug. ***
Comment 5 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-11-24 09:22:36 UTC
*** Bug 882635 has been marked as a duplicate of this bug. ***
Comment 6 Ionen Wolkens gentoo-dev 2022-11-24 20:22:13 UTC
*** Bug 882411 has been marked as a duplicate of this bug. ***