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Bug 882355 - sci-biology/hmmer-3.1_beta2-r1 leaves trace of segfault in dmesg
Summary: sci-biology/hmmer-3.1_beta2-r1 leaves trace of segfault in dmesg
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
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Reported: 2022-11-21 08:42 UTC by Agostino Sarubbo
Modified: 2022-11-21 08:42 UTC (History)
0 users

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Description Agostino Sarubbo gentoo-dev 2022-11-21 08:42:06 UTC 
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-biology/hmmer-3.1_beta2-r1 leaves trace of segfault in dmesg.
Discovered on: amd64 (internal ref: ci)

NOTE:
To reproduce this issue:
1) Install the package with FEATURES=test
2) Check dmesg output with: dmesg -T | grep -E '( segfault | traps:| audit:)'

This type of report comes from a check that is a bit outside of the tinderbox, that's the reason because build.log was not provided (however in cases like these the build.log doesn't help much) but if you need further help to diagnose this issue feel free to ask.

In any case I'm providing what I can see via dmesg.
Comment 1 Agostino Sarubbo gentoo-dev 2022-11-21 08:42:30 UTC 
[Sun Nov 20 22:25:19 2022] hmmpgmd[47804]: segfault at 8 ip 000055fa54e2c84e sp 00007ffcb096e350 error 4 in hmmpgmd[55fa54dc4000+b1000]