Bug 864265 – dev-util/pkgconf -1.9.x: misbehaviour with --libs and --cflags (dev-util/cargo-ebuild: build failure (/deps/liblibgit2_sys-4bf0dc4a10c9a7c0.rlib(openssl.o): undefined reference to symbol 'BIO_set_init@@OPENSSL_3.0.0'))

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Sam James 2022-08-08 01:58:30 UTC]

Created attachment 798610 [details]
build.log

[...]
  = note: /usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/liblibgit2_sys-4bf0dc4a10c9a7c0.rlib(openssl.o): undefined reference to symbol 'BIO_set_init@@OPENSSL_3.0.0'
          /usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libcrypto.so.3: error adding symbols: DSO missing from command line
          collect2: error: ld returned 1 exit status
          
  = help: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified
  = note: use the `-l` flag to specify native libraries to link
  = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#cargorustc-link-libkindname)

error: could not compile `cargo-ebuild` due to previous error

Caused by:
  process didn't exit successfully: `rustc --crate-name cargo_ebuild --edition=2018 src/main.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type bin --emit=dep-info,link -C opt-level=3 -C embed-bitcode=no --cfg 'feature="default"' --cfg 'feature="vendored-libgit2"' -C metadata=37b827b952319ea6 -C extra-filename=-37b827b952319ea6 --out-dir /var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps -L dependency=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps --extern anyhow=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libanyhow-aecee40db88d5880.rlib --extern cargo_ebuild=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libcargo_ebuild-8e605509903ddf93.rlib --extern cargo_lock=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libcargo_lock-0873b3151d4cbcf3.rlib --extern cargo_metadata=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libcargo_metadata-fbffafab3741ae0e.rlib --extern itertools=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libitertools-1d3edf3d5d43d855.rlib --extern phf=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libphf-8f0c8bf35b5de12c.rlib --extern rustsec=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/librustsec-b52db7263d3352d8.rlib --extern serde=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libserde-2544a539da581723.rlib --extern structopt=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libstructopt-3633a101afa6eba9.rlib --extern tera=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libtera-d86eb8237e7e6f99.rlib --extern time=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/deps/libtime-acf96ce9d0cec519.rlib -C target-cpu=native -L native=/var/tmp/portage/dev-util/cargo-ebuild-0.5.2/work/cargo-ebuild-0.5.2/target/release/build/libgit2-sys-674c4b809578b8d2/out/build -L native=/usr/lib64` (exit status: 1)
[EE] ERROR: dev-util/cargo-ebuild-0.5.2::gentoo failed (compile phase):
[EE]   cargo build failed

----

# emerge --info
Portage 3.0.34 (python 3.11.0-beta-5, default/linux/amd64/17.1/hardened, gcc-12.1.1, glibc-2.36, 5.15.58-gentoo-dist-hardened x86_64)
=================================================================
System uname: Linux-5.15.58-gentoo-dist-hardened-x86_64-AMD_Ryzen_9_3950X_16-Core_Processor-with-glibc2.36
KiB Mem:    65765032 total,  19854692 free
KiB Swap:    8290300 total,   5517564 free
Timestamp of repository gentoo: Sun, 07 Aug 2022 08:16:59 +0000
Head commit of repository gentoo: 2eb03c681cff8c50ece78b9b5298b4b27a251a51

Timestamp of repository kde: Sat, 06 Aug 2022 13:16:43 +0000
Head commit of repository kde: 1ad2abb7dec40bdd80dfa4d5518681cdf018fe6c

Timestamp of repository qt: Wed, 03 Aug 2022 09:16:47 +0000
Head commit of repository qt: 980a3b9d8f755cdb316efdfd77c268b6f43a2c32

Timestamp of repository sam_c: Thu, 28 Jul 2022 03:31:30 +0000
Head commit of repository sam_c: 60677498000fd6da6b37a34a7af2a3e74465e191

Timestamp of repository steam-overlay: Sat, 06 Aug 2022 09:46:45 +0000
Head commit of repository steam-overlay: 2592b84d5ad8fdc0b64b4dba032287c98733d647

sh dash 0.5.11.5
ld GNU ld (Gentoo 2.39 p2) 2.39.0
ccache version 4.6.1 [disabled]
app-misc/pax-utils:        1.3.5::gentoo
app-shells/bash:           5.2_rc2-r1::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.36.0::gentoo
dev-lang/python:           2.7.18_p15::gentoo, 3.8.13_p4::gentoo, 3.9.13_p1::gentoo, 3.10.6::gentoo, 3.11.0_beta5-r1::gentoo
dev-lang/rust:             1.62.1::gentoo
dev-util/ccache:           4.6.1::gentoo
dev-util/cmake:            3.24.0::gentoo
dev-util/meson:            0.63.0::gentoo
sys-apps/baselayout:       2.8-r2::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-apps/systemd:          251.3::gentoo
sys-devel/autoconf:        2.13-r2::gentoo, 2.71-r1::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.39::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/clang:           14.0.6-r1::gentoo
sys-devel/gcc:             11.3.1_p20220805::gentoo, 12.1.1_p20220806::gentoo
sys-devel/gcc-config:      2.5-r1::gentoo
sys-devel/libtool:         2.4.7::gentoo
sys-devel/lld:             14.0.6::gentoo
sys-devel/llvm:            14.0.6-r2::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.19::gentoo (virtual/os-headers)
sys-libs/glibc:            2.36::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo.git
    priority: -1000
    sync-git-verify-commit-signature: yes
    sync-git-clone-extra-opts: -b stable -c gc.reflogExpire=0 -c gc.reflogExpireUnreachable=0 -c gc.rerereresolved=0 -c gc.rerereunresolved=0 -c gc.pruneExpire=now

crossdev
    location: /var/db/repos/crossdev
    masters: gentoo

kde
    location: /var/db/repos/kde
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/kde.git
    masters: gentoo

qt
    location: /var/db/repos/qt
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/qt.git
    masters: gentoo

sam_c
    location: /var/db/repos/sam_c
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/sam_c.git
    masters: gentoo

steam-overlay
    location: /var/db/repos/steam-overlay
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/steam-overlay.git
    masters: gentoo

test
    location: /var/db/repos/test
    masters: gentoo

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches -D_GLIBCXX_ASSERTIONS"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--keep-going --with-bdeps=y --complete-graph --deep --dynamic-deps=n --changed-deps=n --usepkg-exclude sys-fs/zfs --usepkg-exclude sys-fs/zfs-kmod --usepkg=y --implicit-system-deps=n --jobs=4 --load-average 32"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg cgroup clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=native -fdiagnostics-color=always -frecord-gcc-switches"
GENTOO_MIRRORS="http://mirror.bytemark.co.uk/gentoo/ http://www.mirrorservice.org/sites/distfiles.gentoo.org/ http://mirrors.soeasyto.com/distfiles.gentoo.org/"
LANG="en_GB.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -Wl,-z,pack-relative-relocs"
LINGUAS="en en_GB"
PKGDIR="/var/cache/binpkgs"
PORTAGE_COMPRESS="pzstd"
PORTAGE_COMPRESS_FLAGS="-9 --rm -q"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RUSTFLAGS="-C target-cpu=native"
SHELL="/bin/bash"
USE="PIC X a52 aac acl acpi activities aes alsa amd64 avx avx2 bash-completion bluetooth branding bzip2 cairo caps cdda cdr clang crypt dbus declarative dist-kernel dri dts dvd dvdr emacs encode exif f16c filecaps firewalld flac fma3 freetype gif gmp gpm graphite gtk gui hardened harfbuzz hunspell iconv icu ipv6 jit jpeg kde kdesu kwallet lcms libglvnd libnotify libtirpc llvm-libunwind lto mad mmx mmxext mng mp3 mp4 mpeg multilib ncurses nftables nls nptl ogg opengl openmp pam pango pclmul pcre pdf pgo pie pipewire plasma png policykit popcnt ppds pulseaudio qml qt5 rdrand readline screencast sdl seccomp semantic-desktop sha spell sse sse2 sse3 sse4_1 sse4_2 sse4a ssl ssp ssse3 startup-notification svg system-av1 system-binutils system-boost system-bootstrap system-cairo system-clang system-digest system-ffmpeg system-harfbuzz system-heimdal system-icu system-jpeg system-leveldb system-libevent system-libs system-libvpx system-libyaml system-lz4 system-mitkrb5 system-sqlite system-ssl system-tbb system-uulib system-webp system-zlib systemd threads tiff truetype udev udisks unicode upower usb verify-sig vorbis vulkan wayland widgets x264 xattr xcb xml xtpax xv xvid zfs zlib zsh-completion" ABI_X86="32 64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" L10N="en en-GB" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="AArch64 AMDGPU ARM AVR BPF Hexagon Lanai MSP430 Mips NVPTX PowerPC RISCV Sparc SystemZ WebAssembly X86 XCore" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10 pypy3 python3_11 python3_8 python3_9" QEMU_USER_TARGETS="aarch64 aarch64_be alpha armeb hppa m68k ppc64le sparc64" RUBY_TARGETS="ruby31" USERLAND="GNU" VIDEO_CARDS="amdgpu radeonsi radeon" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, SIZE, STRINGS, STRIP, YACC, YFLAGS

[Comment 1 Sam James 2022-08-08 01:59:02 UTC]

I've just built my system with DT_RELR (-Wl,-z,pack-relative-relocs in LDFLAGS) but if I disable it for cargo-ebuild, I still get the failure, and nothing else failed to build.

I haven't tried disabling it for OpenSSL and rebuilding cargo-ebuild though.

[Comment 2 Sam James 2022-08-08 03:44:14 UTC]

*** Bug 864271 has been marked as a duplicate of this bug. ***

[Comment 3 Sam James 2022-08-08 03:45:18 UTC]

(In reply to Sam James from comment #1)
> I've just built my system with DT_RELR (-Wl,-z,pack-relative-relocs in
> LDFLAGS) but if I disable it for cargo-ebuild, I still get the failure, and
> nothing else failed to build.
> 
> I haven't tried disabling it for OpenSSL and rebuilding cargo-ebuild though.

It's just a pkgconf bug with 1.9.{0,1}: https://github.com/pkgconf/pkgconf/issues/258. Thanks to ionen for tracking it down.

[Comment 4 Ionen Wolkens 2022-08-09 02:11:14 UTC]

That was fixed by pkgconf-1.9.2 added in [1] and cargo-ebuild builds fine with it.

[1] https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0d8c7c9ed89