too long lines were shrinked: [1143/1147] /usr/bin/cmake -E cmake_symlink_library lib/libnblib_gmx.so.0.1.0 lib/libnblib_gmx.so.0 lib/libnblib_gmx.so && : [1144/1147] : && /usr/lib/llvm/14/bin/x86_64-pc-linux-gnu-clang++ -pipe -march=native -fno-diagnostics-color -O2 -Wl,-rpath -Wl,/usr/lib64 -Wl,-rpath -Wl,/usr/lib64 -Wl,--enable-new-dtags -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o FAILED: bin/gmx : && /usr/lib/llvm/14/bin/x86_64-pc-linux-gnu-clang++ -pipe -march=native -fno-diagnostics-color -O2 -Wl,-rpath -Wl,/usr/lib64 -Wl,-rpath -Wl,/usr/lib64 -Wl,--enable-new-dtags -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 src/programs/CMakeFiles/gmx_objlib.dir/gmx.cpp.o src/program /usr/bin/x86_64-pc-linux-gnu-ld: lib/libgromacs.so.7.0.0: undefined reference to `mu::ParserError::GetMsg() const' /usr/bin/x86_64-pc-linux-gnu-ld: lib/libgromacs.so.7.0.0: undefined reference to `mu::ParserBase::SetExpr(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)' /usr/bin/x86_64-pc-linux-gnu-ld: lib/libgromacs.so.7.0.0: undefined reference to `mu::ParserBase::DefineVar(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, double*)' ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_plasma_systemd-j4-20220727-190004 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-12.1.1 * clang/llvm (if any): clang version 14.0.6 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/14/bin /usr/lib/llvm/14 14.0.6 Python 3.10.5 Available Ruby profiles: [1] ruby27 (with Rubygems) [2] ruby31 (with Rubygems) * Available Rust versions: [1] rust-bin-1.62.1 * The following VMs are available for generation-2: 1) IcedTea JDK 3.16.0 [icedtea-bin-8] 2) Eclipse Temurin JDK 11.0.15_p10 [openjdk-bin-11] *) Eclipse Temurin JDK 17.0.3_p7 [openjdk-bin-17] 4) Eclipse Temurin JDK 8.332_p09 [openjdk-bin-8] 5) Eclipse Temurin JRE 17.0.3_p7 [openjdk-jre-bin-17] Available Java Virtual Machines: [1] icedtea-bin-8 [2] openjdk-bin-8 [3] openjdk-bin-11 [4] openjdk-bin-17 system-vm [5] openjdk-jre-bin-17 The Glorious Glasgow Haskell Compilation System, version 9.0.2 php cli: HEAD of ::gentoo commit d00b06af4340441f460626fe1f000ebbeb1fe293 Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Sat Jul 30 00:16:38 2022 +0000 2022-07-30 00:16:38 UTC emerge -qpvO sci-chemistry/gromacs [ebuild N ] sci-chemistry/gromacs-2022.2 USE="clang custom-cflags doc fftw gmxapi gmxapi-legacy hwloc offensive openmp single-precision threads tng -blas -build-manual -clang-cuda (-cuda) -double-precision -lapack -mkl -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_10 -python3_8 -python3_9 -python3_11"
Created attachment 795628 [details] emerge-info.txt
Created attachment 795631 [details] emerge-history.txt
Created attachment 795634 [details] environment
Created attachment 795637 [details] etc.portage.tar.bz2
Created attachment 795640 [details] logs.tar.bz2
Created attachment 795643 [details] sci-chemistry:gromacs-2022.2:20220730-025812.log.bz2
Created attachment 795646 [details] temp.tar.bz2
Should be fixed with recent versions
