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Bug 854198 - sci-chemistry/gromacs-2022.1 - /.../ld: cannot find -ltng_io: No such file or directory
Summary: sci-chemistry/gromacs-2022.1 - /.../ld: cannot find -ltng_io: No such file or...
Status: RESOLVED WORKSFORME
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-06-25 08:23 UTC by Toralf Förster
Modified: 2023-04-25 09:53 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.66 KB, text/plain)
2022-06-25 08:23 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,139.20 KB, text/plain)
2022-06-25 08:23 UTC, Toralf Förster
Details
environment (environment,175.24 KB, text/plain)
2022-06-25 08:23 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,43.26 KB, application/x-bzip)
2022-06-25 08:23 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,9.64 KB, application/x-bzip)
2022-06-25 08:23 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2022.1:20220624-224138.log.bz2 (sci-chemistry:gromacs-2022.1:20220624-224138.log.bz2,38.09 KB, application/x-bzip)
2022-06-25 08:23 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,75.99 KB, application/x-bzip)
2022-06-25 08:23 UTC, Toralf Förster
Details
emerge-info.txt (emerge-info.txt,20.14 KB, text/plain)
2023-02-19 11:13 UTC, Toralf Förster
Details
emerge-history.txt.bz2 (emerge-history.txt.bz2,79.95 KB, application/x-bzip)
2023-02-19 11:13 UTC, Toralf Förster
Details
environment (environment,179.90 KB, text/plain)
2023-02-19 11:13 UTC, Toralf Förster
Details
etc.clang.tar.bz2 (etc.clang.tar.bz2,707 bytes, application/x-bzip)
2023-02-19 11:13 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,37.79 KB, application/x-bzip)
2023-02-19 11:13 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,11.10 KB, application/x-bzip)
2023-02-19 11:13 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2023:20230218-230548.log.bz2 (sci-chemistry:gromacs-2023:20230218-230548.log.bz2,46.20 KB, application/x-bzip)
2023-02-19 11:13 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,85.68 KB, application/x-bzip)
2023-02-19 11:13 UTC, Toralf Förster
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Toralf Förster gentoo-dev 2022-06-25 08:23:45 UTC
too long lines were shrinked:

[1108/1117] /usr/bin/x86_64-pc-linux-gnu-g++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -Dlibgromacs_EXPORTS -I/var/tmp/portage/sci-chemistry/gromacs-2022.1/work/gromacs-2022.1/src/include -I/var/tmp/portage/sci-chemistry/gromacs-2022.1/work/gromacs-2022.1_float/src/include -I/var/tmp/portage/sci-chemistry/grom
[1109/1117] : && /usr/bin/x86_64-pc-linux-gnu-g++ -fPIC -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -shared -Wl,-soname,libgromacs.so.7 -o lib/libgromacs.so.7.0.0 src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cp
FAILED: lib/libgromacs.so.7.0.0 
: && /usr/bin/x86_64-pc-linux-gnu-g++ -fPIC -pipe -march=native -fno-diagnostics-color -O2  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -shared -Wl,-soname,libgromacs.so.7 -o lib/libgromacs.so.7.0.0 src/gromacs/linearalgebra/CMakeFiles/linearalgebra.dir/eigensolver.cpp.o src/grom
/usr/lib/gcc/x86_64-pc-linux-gnu/12.1.1/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -ltng_io: No such file or directory
collect2: error: ld returned 1 exit status
ninja: build stopped: subcommand failed.

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib-j4-20220623-195224

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-12.1.1 *
clang/llvm (if any):
clang version 14.0.5
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/14/bin
/usr/lib/llvm/14
14.0.5
Python 3.9.13
Available Ruby profiles:
  (none found)
Available Rust versions:
  [1]   rust-1.61.0 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JRE 17.0.3_p7 [openjdk-jre-bin-17]
2)	Eclipse Temurin JRE 8.332_p09 [openjdk-jre-bin-8]
Available Java Virtual Machines:
  [1]   openjdk-jre-bin-8 
  [2]   openjdk-jre-bin-17  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4
php cli:

  HEAD of ::gentoo
commit 4e4f8191c76bca3b4b1b2d4ebcc5788275b3542d
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Fri Jun 24 21:32:50 2022 +0000

    2022-06-24 21:32:49 UTC

emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2022.1  USE="custom-cflags doc gmxapi hwloc openmp single-precision threads -blas -build-manual -clang -clang-cuda (-cuda) -double-precision -fftw -gmxapi-legacy -lapack -mkl -mpi -offensive -opencl (-python) -test -tng" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_9 -python3_8 -python3_10"
Comment 1 Toralf Förster gentoo-dev 2022-06-25 08:23:47 UTC
Created attachment 787523 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2022-06-25 08:23:48 UTC
Created attachment 787526 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2022-06-25 08:23:50 UTC
Created attachment 787529 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2022-06-25 08:23:51 UTC
Created attachment 787532 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2022-06-25 08:23:52 UTC
Created attachment 787535 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2022-06-25 08:23:53 UTC
Created attachment 787538 [details]
sci-chemistry:gromacs-2022.1:20220624-224138.log.bz2
Comment 7 Toralf Förster gentoo-dev 2022-06-25 08:23:55 UTC
Created attachment 787541 [details]
temp.tar.bz2
Comment 8 Alexey Shvetsov archtester gentoo-dev 2022-07-04 18:07:55 UTC
I cannot reproduce that
Comment 9 Toralf Förster gentoo-dev 2023-02-19 11:13:02 UTC
appeared recently at the tinderbox image 17.1_desktop_plasma_systemd-j4-20230214-230019
Comment 10 Toralf Förster gentoo-dev 2023-02-19 11:13:03 UTC
Created attachment 852840 [details]
emerge-info.txt
Comment 11 Toralf Förster gentoo-dev 2023-02-19 11:13:05 UTC
Created attachment 852842 [details]
emerge-history.txt.bz2
Comment 12 Toralf Förster gentoo-dev 2023-02-19 11:13:07 UTC
Created attachment 852844 [details]
environment
Comment 13 Toralf Förster gentoo-dev 2023-02-19 11:13:07 UTC
Created attachment 852846 [details]
etc.clang.tar.bz2
Comment 14 Toralf Förster gentoo-dev 2023-02-19 11:13:09 UTC
Created attachment 852848 [details]
etc.portage.tar.bz2
Comment 15 Toralf Förster gentoo-dev 2023-02-19 11:13:10 UTC
Created attachment 852850 [details]
logs.tar.bz2
Comment 16 Toralf Förster gentoo-dev 2023-02-19 11:13:11 UTC
Created attachment 852852 [details]
sci-chemistry:gromacs-2023:20230218-230548.log.bz2
Comment 17 Toralf Förster gentoo-dev 2023-02-19 11:13:13 UTC
Created attachment 852854 [details]
temp.tar.bz2
Comment 18 Alexey Shvetsov archtester gentoo-dev 2023-04-25 09:53:56 UTC
I cannot reproduce it in clean env