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Bug 850340 - dev-vcs/tortoisehg-5.9.3: fails tests (Python error: Segmentation fault)
Summary: dev-vcs/tortoisehg-5.9.3: fails tests (Python error: Segmentation fault)
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Sergey Torokhov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-06-07 06:58 UTC by Joonas Niilola
Modified: 2022-06-07 08:18 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
tortoisehg-5.9.3:20220607-065434.log (tortoisehg-5.9.3:20220607-065434.log,32.10 KB, text/plain)
2022-06-07 06:59 UTC, Joonas Niilola
Details

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Description Joonas Niilola gentoo-dev 2022-06-07 06:58:54 UTC
Portage 3.0.30 (python 3.9.12-final-0, default/linux/amd64/17.1, gcc-11.3.0, glibc-2.34-r13, 5.15.41-gentoo x86_64)
=================================================================
System uname: Linux-5.15.41-gentoo-x86_64-AMD_Ryzen_7_3700X_8-Core_Processor-with-glibc2.34
KiB Mem:    32855716 total,  32353216 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Tue, 07 Jun 2022 04:48:19 +0000
Head commit of repository gentoo: e952d3f17d643180b3471216d3730ae447b22a44

sh bash 5.1_p16
ld GNU ld (Gentoo 2.37_p1 p2) 2.37
app-misc/pax-utils:        1.3.3::gentoo
app-shells/bash:           5.1_p16::gentoo
dev-lang/perl:             5.34.0-r9::gentoo
dev-lang/python:           3.9.12::gentoo
sys-apps/baselayout:       2.8::gentoo
sys-apps/openrc:           0.44.10::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-devel/autoconf:        2.71-r1::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.37_p1-r2::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/gcc:             11.3.0::gentoo
sys-devel/gcc-config:      2.5-r1::gentoo
sys-devel/libtool:         2.4.6-r6::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.15-r3::gentoo (virtual/os-headers)
sys-libs/glibc:            2.34-r13::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://github.com/gentoo-mirror/gentoo
    priority: -1000

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="*"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--autounmask=y --autounmask-continue --autounmask-use=y --autounmask-write --binpkg-changed-deps=y --buildpkg-exclude virtual --buildpkg-exclude acct-* --buildpkg-exclude sys-kernel --nospinner --jobs=8 --usepkg"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-march=native -O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="https://distfiles.gentoo.org"
LANG="C.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS=" en en_US en-US fi sv "
MAKEOPTS="-j16"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 bzip2 cli crypt dbus dri elogind fortran gdbm iconv ipv6 libglvnd libtirpc multilib ncurses nptl openmp openrc pam pcre readline seccomp split-usr ssl udev unicode xattr zlib" ABI_X86="64 32" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="evdev" KERNEL="linux" L10N="en en_US en-US fi sv" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="AMDGPU BPF" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SHELL, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Joonas Niilola gentoo-dev 2022-06-07 06:59:24 UTC
Created attachment 783227 [details]
tortoisehg-5.9.3:20220607-065434.log
Comment 2 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-06-07 07:01:15 UTC
Might be https://projects.gentoo.org/python/guide/test.html#tests-aborting-due-to-assertions ish, I don't remember if they removed/changed the aborted message or not.

In any case, could you grab a backtrace please?
Comment 3 Joonas Niilola gentoo-dev 2022-06-07 07:12:36 UTC
(In reply to Sam James from comment #2)
> 
> In any case, could you grab a backtrace please?

I seem to be able to reproduce it. Is there an easy way to get python backtrace from the ebuild? By modifying package.env or the ebuild itself? Or how else should I do it...
Comment 4 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-06-07 07:17:09 UTC
(In reply to Joonas Niilola from comment #3)
> (In reply to Sam James from comment #2)
> > 
> > In any case, could you grab a backtrace please?
> 
> I seem to be able to reproduce it. Is there an easy way to get python
> backtrace from the ebuild? By modifying package.env or the ebuild itself? Or
> how else should I do it...

It'd work to use coredumpctl if systemd or minicoredumper if openrc (or no init) (then it can just capture it from the failed run magically).

Otherwise, the hackier way is to try and run the same python command which fails in the workdir / test dir
Comment 5 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-06-07 07:21:09 UTC
(I can't reproduce sadly or I'd just grab it and tell you how I did :|)
Comment 6 Joonas Niilola gentoo-dev 2022-06-07 07:29:40 UTC
I couldn't figure out minicoredumper, I guess it needs to be "attached" to host outside a container to work.

tried manually with pytest -vvv and got:
tests/widget/repofilterbar_branch_test.py::RepoFilterBarBranchTest::test_change_branch This plugin does not support propagateSizeHints()
PASSED
tests/widget/repofilterbar_branch_test.py::RepoFilterBarBranchTest::test_include_closed_branches This plugin does not support propagateSizeHints()
PASSED
tests/widget/repofilterbar_branch_test.py::RepoFilterBarBranchTest::test_label_for_all_branches This plugin does not support propagateSizeHints()
Fatal Python error: Segmentation fault

Thread 0x00007fd3cbc31740 (most recent call first):
  File "/var/tmp/portage/dev-vcs/tortoisehg-5.9.3/work/thg-5.9.3/tests/widget/repofilterbar_branch_test.py", line 60 in tearDown
  File "/usr/lib/python3.9/unittest/case.py", line 553 in _callTearDown
  File "/usr/lib/python3.9/unittest/case.py", line 595 in run
  File "/usr/lib/python3.9/unittest/case.py", line 651 in __call__
  File "/usr/lib/python3.9/site-packages/_pytest/unittest.py", line 327 in runtest
  File "/usr/lib/python3.9/site-packages/_pytest/runner.py", line 166 in pytest_runtest_call
  File "/usr/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
  File "/usr/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
  File "/usr/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
  File "/usr/lib/python3.9/site-packages/_pytest/runner.py", line 259 in <lambda>
  File "/usr/lib/python3.9/site-packages/_pytest/runner.py", line 338 in from_call
  File "/usr/lib/python3.9/site-packages/_pytest/runner.py", line 258 in call_runtest_hook
  File "/usr/lib/python3.9/site-packages/_pytest/runner.py", line 219 in call_and_report
  File "/usr/lib/python3.9/site-packages/_pytest/runner.py", line 130 in runtestprotocol
  File "/usr/lib/python3.9/site-packages/_pytest/runner.py", line 111 in pytest_runtest_protocol
  File "/usr/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
  File "/usr/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
  File "/usr/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
  File "/usr/lib/python3.9/site-packages/_pytest/main.py", line 347 in pytest_runtestloop
  File "/usr/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
  File "/usr/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
  File "/usr/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
  File "/usr/lib/python3.9/site-packages/_pytest/main.py", line 322 in _main
  File "/usr/lib/python3.9/site-packages/_pytest/main.py", line 268 in wrap_session
  File "/usr/lib/python3.9/site-packages/_pytest/main.py", line 315 in pytest_cmdline_main
  File "/usr/lib/python3.9/site-packages/pluggy/_callers.py", line 39 in _multicall
  File "/usr/lib/python3.9/site-packages/pluggy/_manager.py", line 80 in _hookexec
  File "/usr/lib/python3.9/site-packages/pluggy/_hooks.py", line 265 in __call__
  File "/usr/lib/python3.9/site-packages/_pytest/config/__init__.py", line 164 in main
  File "/var/tmp/portage/dev-vcs/tortoisehg-5.9.3/work/thg-5.9.3/tests/run-tests.py", line 21 in main
  File "/var/tmp/portage/dev-vcs/tortoisehg-5.9.3/work/thg-5.9.3/tests/run-tests.py", line 25 in <module>
Segmentation fault

Any help?
Comment 7 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-06-07 07:32:18 UTC
try gdb --args pytest ...
then "r"
Then "bt" when it fails
Comment 8 Joonas Niilola gentoo-dev 2022-06-07 07:42:14 UTC
tests/widget/repofilterbar_branch_test.py::RepoFilterBarBranchTest::test_selected_inactive_branch_removed_from_list [New Thread 0x7ffff15f1640 (LWP 18328)]
[Thread 0x7ffff15f1640 (LWP 18328) exited]
This plugin does not support propagateSizeHints()
PASSED
tests/widget/repofilterbar_branch_test.py::RepoFilterBarEmptyBranchTest::test_branch_combo_enabled_if_closed_branches_included [New Thread 0x7ffff15f1640 (LWP 18329)]
This plugin does not support propagateSizeHints()

Thread 9 "QThread" received signal SIGSEGV, Segmentation fault.
[Switching to Thread 0x7ffff15f1640 (LWP 18329)]
0x00007ffff656ade0 in typeinfo for QObjectCleanupHandler () from /usr/lib64/libQt5Core.so.5
(gdb) bt
#0  0x00007ffff656ade0 in typeinfo for QObjectCleanupHandler () from /usr/lib64/libQt5Core.so.5
#1  0x00007ffff22890bb in ?? () from /usr/lib64/libqscintilla2_qt5.so.15
#2  0x00007ffff606cab9 in ?? () from /usr/lib64/libQt5Core.so.5
#3  0x00007ffff7abe0d7 in ?? () from /lib64/libc.so.6
#4  0x00007ffff7b4231c in ?? () from /lib64/libc.so.6

We're getting somewhere I think :)
Comment 9 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-06-07 07:48:59 UTC
Nice! We are!

Could you enable debugging symbols for sys-libs/glibc, dev-qt/qtcore, x11-libs/qscintilla, dev-python/qscintilla-python (to be safe, as it installs a library), 

Might need them for dev-python/PyQt5 too but you can hold off on that if you want until we're sure, as it's not a fast build.
Comment 10 Joonas Niilola gentoo-dev 2022-06-07 08:18:27 UTC
After running, 
  USE="printsupport network gui widgets svg" CFLAGS="-march=native -O2 -pipe -ggdb3" CXXFLAGS="-march=native -O2 -pipe -ggdb3" FEATURES="splitdebug compressdebug -nostrip" emerge -1av --usepkg=n --buildpkg=n sys-libs/glibc dev-qt/qtcore x11-libs/qscintilla dev-python/qscintilla-python dev-python/PyQt5

I'm not able to reproduce the issue anymore after 10 tries :) I imagine it was some qt-related broken binpkg, qtcore or qscintilla or qscintilla-python since I had to manually build PyQt5 anyway due to the REQUIRED_USE constraints.