Bug 842387 – sci-biology/t-coffee-11.00-r3 - io_lib/io_func.c: error: cannot convert std::nullptr_t to int in return

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2022-05-03 09:23:17 UTC]

In file included from ./util_lib/util.h:34,
                 from ./util_lib_header.h:30,
                 from io_lib/io_func.c:34:
io_lib/io_func.c: In function 'int output_raw_score(Alignment*, Alignment*, char*)':
io_lib/io_func.c:1235:17: error: cannot convert 'std::nullptr_t' to 'int' in return
 1235 |   if (!A)return NULL;
      |                 ^~~~

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl-j4-20220428-210012

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-11.3.0 *
clang/llvm (if any):
clang version 14.0.3
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/14/bin
/usr/lib/llvm/14
14.0.3
Python 3.9.12
Available Ruby profiles:
  (none found)
Available Rust versions:
  [1]   rust-bin-1.60.0
  [2]   rust-1.60.0 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JDK 11.0.14_p9 [openjdk-bin-11]
Available Java Virtual Machines:
  [1]   openjdk-bin-11  system-vm

php cli:
  [1]   php7.4
  [2]   php8.0
  [3]   php8.1 *

  HEAD of ::gentoo
commit b64e9bf9ddd99f4c0bac69041ed3880f833430f0
Author: Repository mirror & CI <[e-mail]>
Date:   Mon May 2 19:48:10 2022 +0000

    2022-05-02 19:48:09 UTC

emerge -qpvO sci-biology/t-coffee
[ebuild  N    ] sci-biology/t-coffee-11.00-r2

[Comment 1 Toralf Förster 2022-05-03 09:23:18 UTC]

Created attachment 776297 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2022-05-03 09:23:20 UTC]

Created attachment 776300 [details]
emerge-history.txt.bz2

[Comment 3 Toralf Förster 2022-05-03 09:23:21 UTC]

Created attachment 776303 [details]
environment

[Comment 4 Toralf Förster 2022-05-03 09:23:22 UTC]

Created attachment 776306 [details]
etc.portage.tar.bz2

[Comment 5 Toralf Förster 2022-05-03 09:23:23 UTC]

Created attachment 776309 [details]
logs.tar.bz2

[Comment 6 Toralf Förster 2022-05-03 09:23:24 UTC]

Created attachment 776312 [details]
sci-biology:t-coffee-11.00-r2:20220502-204440.log

[Comment 7 Toralf Förster 2022-05-03 09:23:25 UTC]

Created attachment 776315 [details]
temp.tar.bz2

[Comment 8 Agostino Sarubbo 2022-09-26 09:17:14 UTC]

tinderbox_musl has reproduced this issue with version 11.00-r3 - Updating summary.