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Bug 841383 - dev-ruby/psych-4.0.3: psych.so: undefined symbol: Init_psych
Summary: dev-ruby/psych-4.0.3: psych.so: undefined symbol: Init_psych
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Ruby Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-04-27 20:52 UTC by Craig Andrews
Modified: 2023-11-06 20:27 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,6.16 KB, text/plain)
2022-04-27 20:52 UTC, Craig Andrews
Details

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Description Craig Andrews gentoo-dev 2022-04-27 20:52:37 UTC
>>> Install dev-ruby/psych-4.0.3 into /var/tmp/portage/dev-ruby/psych-4.0.3/image
 * Running install phase for ruby30 ...
/usr/lib64/ruby/3.0.0/yaml.rb:3: warning: It seems your ruby installation is missing psych (for YAML output).
To eliminate this warning, please install libyaml and reinstall your ruby.
<internal:/usr/lib64/ruby/site_ruby/3.0.0/rubygems/core_ext/kernel_require.rb>:85:in `require': /usr/lib64/ruby/gems/3.0.0/gems/psych-4.0.3/lib/psych.so: undefined symbol: Init_psych - /usr/lib64/ruby/gems/3.0.0/gems/psych-4.0.3/lib/psych.so (LoadError)
        from <internal:/usr/lib64/ruby/site_ruby/3.0.0/rubygems/core_ext/kernel_require.rb>:85:in `require'
        from /usr/lib64/ruby/gems/3.0.0/gems/psych-4.0.3/lib/psych.rb:13:in `<top (required)>'
        from <internal:/usr/lib64/ruby/site_ruby/3.0.0/rubygems/core_ext/kernel_require.rb>:85:in `require'
        from <internal:/usr/lib64/ruby/site_ruby/3.0.0/rubygems/core_ext/kernel_require.rb>:85:in `require'
        from /usr/lib64/ruby/3.0.0/yaml.rb:4:in `<top (required)>'
        from <internal:/usr/lib64/ruby/site_ruby/3.0.0/rubygems/core_ext/kernel_require.rb>:85:in `require'
        from <internal:/usr/lib64/ruby/site_ruby/3.0.0/rubygems/core_ext/kernel_require.rb>:85:in `require'
 * ERROR: dev-ruby/psych-4.0.3::gentoo failed (install phase):


Reproducible: Always




# emerge --info
Portage 3.0.30 (python 3.10.4-final-0, default/linux/amd64/17.1/systemd, gcc-11.3.0, glibc-2.35-r4, 5.17.1-gentoo-r1-x86_64 x86_64)
=================================================================
System uname: Linux-5.17.1-gentoo-r1-x86_64-x86_64-Intel-R-_Core-TM-_i5-6500_CPU_@_3.20GHz-with-glibc2.35
KiB Mem:    16067156 total,   1390812 free
KiB Swap:    8033276 total,   5846944 free
Timestamp of repository gentoo: Wed, 27 Apr 2022 20:30:01 +0000
Head commit of repository gentoo: 40f3d5546ed4fb64f2d72177a5c9a6340056a856
sh bash 5.1_p16
ld GNU ld (Gentoo 2.38 p4) 2.38
ccache version 4.6 [enabled]
app-misc/pax-utils:        1.3.4::gentoo
app-shells/bash:           5.1_p16::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.34.1-r3::gentoo
dev-lang/python:           3.10.4::gentoo
dev-lang/rust:             1.60.0::gentoo
dev-util/ccache:           4.6-r1::gentoo
dev-util/cmake:            3.23.1::gentoo
dev-util/meson:            0.61.4-r2::gentoo
sys-apps/baselayout:       2.8::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-apps/systemd:          250.4-r1::gentoo
sys-devel/autoconf:        2.71-r1::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.38-r2::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/clang:           14.0.1-r1::gentoo
sys-devel/gcc:             11.3.0::gentoo
sys-devel/gcc-config:      2.5-r1::gentoo
sys-devel/libtool:         2.4.7::gentoo
sys-devel/llvm:            13.0.1::gentoo, 14.0.1::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.17-r1::gentoo (virtual/os-headers)
sys-libs/glibc:            2.35-r4::gentoo
Repositories:

gentoo
    location: /var/cache/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 24

x-portage
    location: /usr/local/portage
    masters: gentoo
    priority: 0

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA Intel-SDP Oracle-BCLA-JavaSE Oracle-EADLA AMD-GPU-PRO-EULA"
AR="/usr/bin/gcc-ar"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=native -pipe -fuse-linker-plugin -flto -Wl,-flto -ftree-vectorize -falign-functions=32 -fgraphite-identity -floop-nest-optimize -fno-common"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php8.1/ext-active/ /etc/php/cgi-php8.1/ext-active/ /etc/php/cli-php8.1/ext-active/ /etc/php/fpm-php8.1/ext-active/ /etc/php/phpdbg-php8.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -march=native -pipe -fuse-linker-plugin -flto -Wl,-flto -ftree-vectorize -falign-functions=32 -fgraphite-identity -floop-nest-optimize -fno-common"
DISTDIR="/var/cache/portage/distfiles"
EMERGE_DEFAULT_OPTS="--jobs=4 --load-average=4.5"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg-live candy ccache cgroup clean-logs collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync mount-sandbox multilib-strict network-sandbox news parallel-fetch parallel-install pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms splitdebug strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -flto -Wl,--hash-style=gnu"
LINGUAS="en"
MAKEOPTS="-j5 -l6"
NM="/usr/bin/gcc-nm"
PKGDIR="/var/cache/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RANLIB="/usr/bin/gcc-ranlib"
SHELL="/bin/bash"
USE="X a52 aac aacs acl acpi aiglx alac alsa amd64 amr amrnb amrwb animation apache2 apng argon2 artworkextra asf aspnet2 asyncns authdaemond avahi avi bash-completion bcmath bitmap-fonts bluetooth bluray bmp bonjour brotli btrfs bzip2 cairo caps cdda cddb cdparanoia cdr celt chm clang cli crypt cryptsetup css cups curl daap dav1d dbus device-mapper dga dhclient dirac divx4linux dlloader dns dnssec dovecot-sasl dpms dri dri3 dts dv dvb dvd dvdr dvdread egl enca encode exif ext4 faac fame fat fbcondecor fbsplash ffmpeg fftw firefox flac fontconfig foomaticdb fortran freetype ftp fuse gaim gd gdbm geoip gif gimpprint glamor gles gles1 gles2 glib glibc-omitfp glitz glut gost gphoto2 graphite gsm gstreamer gstreamer10 gudev hardenedphp hbci howl howl-compat http2 https hwdb iconv icu idn imagemagick imap imlib innodb ipv6 jbig jce joystick jpeg jpeg2k junit kdbus kdehiddenvisibility kvm lapack lcms libfame libglvnd libkms libnotify librtmp libtirpc libusb live llvm lm_sensors lvm lz4 lzma lzo mad maildir mdadm mdnsresponder-compat metalink mjpeg mmap mms mng motif mozilla mozsvg mp3 mpeg mpeg2 mplayer mpx multilib musepack mysql mythtv natspec ncurses nemesi network networkmanager nls nptl nptlonly ntfs nvme ocl-icd offensive ofx ogg oggvorbis openal opencl openexr opengl openmp openvg opus pam pango pcre pcre16 pcre32 pcsc-lite pdf pdflib perl pgo phonon pic pie png pnp policykit ppd ppds pulseaudio python quicktime quvi rar readline rtc rtmp schroedinger screensaver sctp sdl seccomp session sftp sharedmem shout smp sna sni sox speex spell split-usr sqlite srt ssh ssl steamruntime suspend2 svg systemd theora threads tiff tls transcode truetype truetype-fonts type-fonts udev udisks unicode unzip upnp ups usb user-session uxa v4l2 vaapi vcd videos virgl vorbis vpx vulkan wayland webdav webp webservices wifi win32codecs wmf wv x264 x265 xanim xattr xcb xcomposite xdg xinerama xml xml2 xpm xprint xrandr xv xvfb xvid xvmc zeroconf zip zlib zstd" ABI_X86="64" ADA_TARGET="gnat_2020" ALSA_CARDS="hda-intel" APACHE2_MODULES="actions alias auth_basic authn_core authz_core authn_socache cache_disk authn_alias authn_anon authn_dbm authn_file authz_dbm authz_groupfile authz_host authz_owner authz_user autoindex brotli cache dav dav_fs dav_lock dconf deflate dir env expires ext_filter file_cache filter headers include info log_config logio mime mime_magic negotiation remoteip rewrite setenvif speling status unique_id userdir usertrack vhost_alias auth_digest proxy proxy_ajp proxy_connect proxy_http proxy_fcgi reqtimeout cgi cgid unixd socache_shmcb proxy_html xml2enc" APACHE2_MPMS="event" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="openssl" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64 pc" INPUT_DEVICES="libinput evdev joystick" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" NGINX_MODULES_HTTP="access auth_basic autoindex brotli browser charset empty_gif fastcgi geo grpc gunzip gzip limit_conn limit_req map memcached mirror proxy referer rewrite scgi split_clients ssi upstream_hash upstream_ip_hash upstream_keepalive upstream_least_conn upstream_zone userid uwsgi" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_10" PYTHON_TARGETS="python3_10" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby30" USERLAND="GNU" VIDEO_CARDS="intel i965 iris amdgpu radeon radeonsi" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Craig Andrews gentoo-dev 2022-04-27 20:52:58 UTC
Created attachment 775077 [details]
build.log
Comment 2 Hans de Graaff gentoo-dev Security 2022-05-17 05:31:09 UTC
Not really clear what is causing this, but dev-ruby/psych missed a dependency on dev-libs/libyaml. That is now fixed in psych 4.0.4, but given that the build log shows that a libyaml is found I doubt that is causing this issue.
Comment 3 m1027 2023-11-06 20:27:02 UTC
I stubled accross the same today, with psych-5.1.0

I fixed it by compiling dev-ruby/stringio without lto. After that psych went through.