The staden package (sci-biology/staden-1.5.3) and all its dependencies compile cleanly on amd64. amd64 keyword was added to sci-biology/staden-1.5.3; sci-libs/io-lib; and app-shells/ksh-93.20040229 ebiuilds in an overlay directory. Reproducible: Always Steps to Reproduce: 1. Copy ebuilds for sci-biology/staden-1.5.3, sci-libs/io-lib and app-shells/ksh-93.20040229 to overlay and add amd64 or ~amd64 keyword 2. emerge staden 3. Add /opt/staden/linux-bin to your $PATH (shouldn't the ebuild do that) 4. Enjoy! Actual Results: Seems to work fine, I read a few abi traces and made a contig. emerge --info Portage 2.0.51.19 (default-linux/amd64/2004.3, gcc-3.4.3, glibc-2.3.4.20041102-r0, 2.6.9-gentoo-r14x86_64) ================================================================= System uname: 2.6.9-gentoo-r14 x86_64 AMD Athlon(tm) 64 Processor 3000+ Gentoo Base System version 1.4.16 Python: dev-lang/python-2.3.4-r1 [2.3.4 (#1, Feb 7 2005, 10:56:30)] ccache version 2.3 [enabled] dev-lang/python: 2.3.4-r1 sys-devel/autoconf: 2.59-r6, 2.13 sys-devel/automake: 1.7.9-r1, 1.8.5-r3, 1.5, 1.4_p6, 1.6.3, 1.9.4 sys-devel/binutils: 2.15.92.0.2-r1 sys-devel/libtool: 1.5.10-r4 virtual/os-headers: 2.6.8.1-r2 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CFLAGS="-march=athlon64 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-march=athlon64 -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoaddcvs autoconfig ccache distlocks sandbox" GENTOO_MIRRORS="ftp://sunsite.icm.edu.pl/pub/linux/distributions/gentoo http://gentoo.prz.rzeszow.pl http://ftp.belnet.be/mirror/rsync.gentoo.org http://gentoo.osuosl.org http://www.ibiblio.org/pub/Linux/distributions/gentoo" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="amd64 X Xaw3d acpi alsa arts berkdb bitmap-fonts cdparanoia cdr crypt cups curl dvd dvdr dvdread encode esd f77 fam flac font-server fortran gdbm gif gimpprint gphoto2 gpm gps gtk gtk2 imagemagick imap imlib ipv6 java jikes jp2 jpeg kde lcms libwww lzw lzw-tiff mad maildir mbox monkey motif multilib mysql ncurses nls nptl nvidia offensive oggvorbis opengl oss pam pdflib perl png python qt readline samba sasl sdl slang spell ssl tcltk tcpd tetex tiff transcode truetype truetype-fonts type1-fonts unicode usb userlocales wmf xine xml xml2 xmms xpm xrandr xscreensaver xv xvid zlib video_cards_nvidia" Unset: ASFLAGS, CBUILD, CTARGET, LANG, LC_ALL, LDFLAGS
That looks like an insanely complicated set of programs. Any hints on how to test?
Would also be interested in testing this... Pawel?
Emerge and all the applications I tried do run. If this is good enough, please mark .. sci-biology/staden-1.5.3 ~amd64 app-shells/ksh-93.20040229 ~amd64 Removing dependancy on bug #96638 seeing as that bug is for a version of ksh which doesn't compile... ksh-93.20040229 compiles fine. Jim Portage 2.0.51.22-r2 (default-linux/amd64/2005.1, gcc-3.4.4, glibc-2.3.5-r1, 2.6.12-gentoo-r9 x86_64) ================================================================= System uname: 2.6.12-gentoo-r9 x86_64 AMD Athlon(tm) 64 Processor 3200+ Gentoo Base System version 1.6.13 dev-lang/python: 2.3.5 sys-apps/sandbox: 1.2.12 sys-devel/autoconf: 2.13, 2.59-r6 sys-devel/automake: 1.4_p6, 1.5, 1.6.3, 1.7.9-r1, 1.8.5-r3, 1.9.5 sys-devel/binutils: 2.15.92.0.2-r10 sys-devel/libtool: 1.5.18-r1 virtual/os-headers: 2.6.11-r2 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=athlon64 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.4/env /usr/kde/3.4/share/config /usr/kde/3.4/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/splash /etc/terminfo /etc/env.d" CXXFLAGS="-O2 -march=athlon64 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoconfig distlocks multilib-strict sandbox sfperms strict" GENTOO_MIRRORS="http://gentoo.blueyonder.co.uk" LINGUAS="en_GB" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X aac alsa amarok amd64 avi berkdb bitmap-fonts browserplugin cdb cdr crypt cups curl directfb dvd dvdr dvdread eds encode esd fam foomaticdb fortran gdbm gif gphoto2 gpm gstreamer gtk gtk2 hal imagemagick imlib ipv6 java jpeg junit kde kdeenablefinal libwww lzw lzw-tiff mad mikmod mp3 mpeg mplayer msn ncurses nls nocd nvidia ogg oggvorbis opengl oss pam pdflib perl pic png python qt quicktime readline real ruby samba sdl spell ssl symlink tcltk tcpd tetex theora tiff truetype truetype-fonts type1-fonts usb userlocales v4l vcd vorbis xine xml2 xpm xv zlib linguas_en_GB userland_GNU kernel_linux elibc_glibc" Unset: ASFLAGS, CTARGET, LANG, LC_ALL, LDFLAGS
Marked ~amd64. Thx for reporting and testing
