Bug 83804 – sci-biology/prosite-18.45 ebuild is broken

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Martin Mokrejš 2005-03-02 05:07:24 UTC]

>>> md5 src_uri ;-) prosite-18.45.tar.bz2
>>> Unpacking source...
>>> Unpacking prosite-18.45.tar.bz2 to /var/tmp/portage/prosite-18.45/work
>>> Source unpacked.

 * Indexing PROSITE for usage with EMBOSS.
/usr/portage/sci-biology/prosite/prosite-18.45.ebuild: line 20: prosextract: command not found

!!! ERROR: sci-biology/prosite-18.45 failed.
!!! Function src_compile, Line 20, Exitcode 127


# emerge -s prosite
Searching...   
[ Results for search key : prosite ]
[ Applications found : 1 ]
 
*  sci-biology/prosite
      Latest version available: 18.45
      Latest version installed: 18.44
      Size of downloaded files: 3,106 kB
      Homepage:    http://ca.expasy.org/prosite
      Description: A protein families and domains database
      License:     swiss-prot

[Comment 1 Olivier Fisette (RETIRED) 2005-03-02 11:26:41 UTC]

Thanks for reporting. I cannot reproduce this, so I will need you to tell me more about your system.

What architecture are you using? What profile? What "USE" flags? Please paste the output of "emerge info" in this bug report so I can get this information.

Also, are you able to reinstall version 18.44 (or to install any version other than 18.45), or does that also fail? Is EMBOSS installed on your system? If so, are you able to execute the "prosextract" program on the command line?

[Comment 2 Olivier Fisette (RETIRED) 2005-03-02 11:59:46 UTC]

I just noticed a potential bug in the ebuild. It might have caused your problem if EMBOSS is not installed on your system. Please sync your Portage tree in an hour or so and try to install PROSITE again.

[Comment 3 Martin Mokrejš 2005-03-03 05:27:30 UTC]

Yes, now the ebuild is fixed. Thanks.

[Comment 4 Olivier Fisette (RETIRED) 2005-03-03 11:42:23 UTC]

Fixed.