836859 – sci-chemistry/mdtraj-1.9.7 fails tests on MUSL

Bug 836859 - sci-chemistry/mdtraj-1.9.7 fails tests on MUSL

Summary: sci-chemistry/mdtraj-1.9.7 fails tests on MUSL

Status:	RESOLVED OBSOLETE

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	Normal normal (vote)
Assignee:	Gentoo Science Related Packages

URL:
Whiteboard:
Keywords:	PMASKED

Depends on:
Blocks:

Reported:	2022-04-05 20:15 UTC by Agostino Sarubbo
Modified:	2024-04-13 14:46 UTC (History)
CC List:	1 user (show)

See Also:
Package list:
Runtime testing required:	---

Attachments
build.log (build.log,489.06 KB, text/plain) 2022-04-05 20:15 UTC, Agostino Sarubbo	Details
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Description Agostino Sarubbo gentoo-dev

2022-04-05 20:15:27 UTC

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-chemistry/mdtraj-1.9.7 fails tests on MUSL.
Discovered on: amd64 (internal ref: tinderbox_musl)

NOTE:
This machine uses MUSL libc

Comment 1 Agostino Sarubbo gentoo-dev

2022-04-05 20:15:31 UTC

Created attachment 768920 [details]
build.log

build log and emerge --info

Comment 2 Agostino Sarubbo gentoo-dev

2022-04-05 20:15:32 UTC

Error(s) that match a know pattern:


",
14481 |         fprintf(stderr, "TNG library: Could not find particle data block with id %"PRId64". %s: %d
15336 |         fprintf(stderr, "TNG library: Cannot find frame nr %"PRId64". %s: %d
E   ModuleNotFoundError: No module named 'fastjsonschema'