Bug 83600 – emerging of R-2.0.0 fails

• Status: RESOLVED NEEDINFO
• Product: Gentoo Linux

[Description Aris Adamantiadis 2005-02-28 13:21:26 UTC]

trying to emerge dev-lang/R-2.0.0: I get this error during buildtime
* DONE (nlme)
begin installing recommended package mgcv
make[2]: *** [mgcv.ts] Error 1
make[2]: Leaving directory `/var/tmp/portage/R-2.0.0/work/R-2.0.0/src/library/Recommended'
make[1]: *** [recommended-packages] Error 2
make[1]: Leaving directory `/var/tmp/portage/R-2.0.0/work/R-2.0.0/src/library/Recommended'
make: *** [stamp-recommended] Error 2

!!! ERROR: dev-lang/R-2.0.0 failed.
!!! Function src_compile, Line 80, Exitcode 2
!!! (no error message)
!!! If you need support, post the topmost build error, NOT this status message.



Reproducible: Always
Steps to Reproduce:
1.emerge -uD --newuse R
2.
3.




Portage 2.0.51-r15 (default-linux/amd64/2004.3, gcc-3.4.3,
glibc-2.3.4.20041102-r0, 2.6.9-gentoo-r14 x86_64)
=================================================================
System uname: 2.6.9-gentoo-r14 x86_64 AMD Athlon 64 Processor 3400+
Gentoo Base System version 1.4.16
Python:              dev-lang/python-2.3.4-r1 [2.3.4 (#1, Feb  9 2005, 16:20:30)]
dev-lang/python:     2.3.4-r1
sys-devel/autoconf:  2.13, 2.59-r6
sys-devel/automake:  1.5, 1.8.5-r3, 1.6.3, 1.7.9-r1, 1.4_p6, 1.9.4
sys-devel/binutils:  2.15.92.0.2-r1
sys-devel/libtool:   1.5.10-r4
virtual/os-headers:  2.6.8.1-r2
ACCEPT_KEYWORDS="amd64"
AUTOCLEAN="yes"
CFLAGS="-O2 -ffast-math -funroll-all-loops -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.2/share/config
/usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown
/usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib/mozilla/defaults/pref
/usr/share/config /usr/share/texmf/dvipdfm/config/
/usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/
/usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control"
CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d"
CXXFLAGS="-O2 -ffast-math -funroll-all-loops -pipe"
DISTDIR="/usr/portage/distfiles"
FEATURES="autoaddcvs autoconfig candy ccache distlocks sandbox"
GENTOO_MIRRORS="http://mirrors.sec.informatik.tu-darmstadt.de/gentoo/"
MAKEOPTS="-j2"
PKGDIR="/usr/portage/packages"
PORTAGE_TMPDIR="/var/tmp"
PORTDIR="/usr/portage"
PORTDIR_OVERLAY="/usr/local/portage"
SYNC="rsync://rsync.gentoo.org/gentoo-portage"
USE="amd64 X acpi alsa apache2 arts avi bash-completion berkdb bitmap-fonts cdr
crypt cups curl dvd dvdr encode esd f77 fam fbcon flac flash font-server
foomaticdb fortran gb gd gdbm gif gmp gnome gphoto2 gpm gstreamer gtk gtk2 guile
icq imagemagick imlib ipv6 jabber java jp2 jpeg junit kde ldap libwww lzw
lzw-tiff mad mikmod motif mozilla mpeg multilib mysql ncurses nls nptl nvidia
oggvorbis opengl oss pam pcmcia pdflib perl png pnp povray ppds prelude python
qt quicktime readline rtc samba sdl slang ssl tcltk tcpd tetex tiff truetype
truetype-fonts type1-fonts usb userlocales v4l v4l2 videos wifi wmf xine
xinerama xml xml2 xmms xpm xrandr xv xvid zlib linguas_fr"
Unset:  ASFLAGS, CBUILD, CTARGET, LANG, LC_ALL, LDFLAGS

[Comment 1 Patrick Kursawe (RETIRED) 2005-03-01 01:25:03 UTC]

There should be a file /var/tmp/portage/R-2.0.0/work/R-2.0.0/src/library/Recommended/mgcv.ts.out - please attach it to this bug.

[Comment 2 Aris Adamantiadis 2005-03-01 03:32:25 UTC]

Created attachment 52366 [details]
the build error log

[Comment 3 Patrick Kursawe (RETIRED) 2005-03-01 05:00:42 UTC]

So an R error, no compile problem - sorry, I give up. Anyone else?

[Comment 4 Marcus D. Hanwell (RETIRED) 2005-04-21 14:35:13 UTC]

Is this fixed in 2.1.0 I just committed to the tree? Also have you tried without -ffast-math -funroll-all-loops in your CFLAGS? Could be we need to filter them in the ebuild.

[Comment 5 Marcus D. Hanwell (RETIRED) 2005-08-20 07:09:16 UTC]

Closing due to lack of response as NEEDINFO. Please reopen if this is still an
issue for you.