Created attachment 764964 [details] test log >>> Test phase: dev-python/mpi4py-3.1.3 * python3_9: running distutils-r1_run_phase python_test Beginning test phase mpiexec: error: resolve_ctls_from_dns_srv: res_nsearch error: Connection refused mpiexec: error: fetch_config: DNS SRV lookup failed mpiexec: error: _establish_config_source: failed to fetch config mpiexec: fatal: Could not establish a configuration source * ERROR: dev-python/mpi4py-3.1.3::gentoo failed (test phase): * Testsuite failed under python3.9 * * Call stack: * ebuild.sh, line 127: Called src_test * environment, line 3094: Called distutils-r1_src_test * environment, line 1439: Called _distutils-r1_run_foreach_impl 'python_test' * environment, line 553: Called python_foreach_impl 'distutils-r1_run_phase' 'python_test' * environment, line 2781: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 2330: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 2328: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test' * environment, line 891: Called distutils-r1_run_phase 'python_test' * environment, line 1366: Called python_test * environment, line 3059: Called die * The specific snippet of code: * mpiexec --use-hwthread-cpus --mca btl tcp,self --mca oob_tcp_if_include lo -n 1 "${PYTHON}" -B ./test/runtests.py -v --exclude="test_msgspec" --exclude="test_spawn" || die "Testsuite failed under ${EPYTHON}"; * * If you need support, post the output of `emerge --info '=dev-python/mpi4py-3.1.3::gentoo'`, * the complete build log and the output of `emerge -pqv '=dev-python/mpi4py-3.1.3::gentoo'`. * The complete build log is located at '/var/tmp/portage/dev-python/mpi4py-3.1.3/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/dev-python/mpi4py-3.1.3/temp/environment'. * Working directory: '/var/tmp/portage/dev-python/mpi4py-3.1.3/work/mpi4py-3.1.3-python3_9'
Portage 3.0.30 (python 3.9.9-final-0, default/linux/amd64/17.1/systemd, gcc-11.2.0, glibc-2.33-r7, 5.10.68-gentoo-dist x86_64) ================================================================= System uname: Linux-5.10.68-gentoo-dist-x86_64-Common_KVM_processor-with-glibc2.33 KiB Mem: 65850752 total, 50362528 free KiB Swap: 0 total, 0 free Timestamp of repository gentoo: Sun, 13 Feb 2022 09:00:01 +0000 Head commit of repository gentoo: d54aba3f47654814765a97a69ef1db8b2d787301 sh bash 5.1_p16 ld GNU ld (Gentoo 2.37_p1 p0) 2.37 app-misc/pax-utils: 1.3.3::gentoo app-shells/bash: 5.1_p16::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.34.0-r6::gentoo dev-lang/python: 2.7.18_p13::gentoo, 3.9.9-r1::gentoo, 3.10.0_p1-r1::gentoo dev-lang/rust-bin: 1.58.1::gentoo dev-util/cmake: 3.22.2::gentoo dev-util/meson: 0.60.3::gentoo sys-apps/baselayout: 2.7-r3::gentoo sys-apps/sandbox: 2.25::gentoo sys-apps/systemd: 250.2::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.71-r1::gentoo sys-devel/automake: 1.16.4::gentoo sys-devel/binutils: 2.37_p1::gentoo sys-devel/binutils-config: 5.4::gentoo sys-devel/clang: 13.0.0::gentoo sys-devel/gcc: 11.2.0::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/llvm: 13.0.0::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.15-r3::gentoo (virtual/os-headers) sys-libs/glibc: 2.33-r7::gentoo Repositories: gentoo location: /var/db/repos/gentoo sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 crossdev location: /var/db/repos/crossdev masters: gentoo priority: 10 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* @FREE @BINARY-REDISTRIBUTABLE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.4/ext-active/ /etc/php/apache2-php8.0/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cgi-php8.0/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/php/cli-php8.0/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe" DISTDIR="/var/cache/distfiles" EMERGE_DEFAULT_OPTS="--jobs 10" ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirror.netcologne.de/gentoo/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" SHELL="/bin/zsh" USE="X acl amd64 bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc multilib ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl systemd udev unicode xattr zlib" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 sse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-4 php8-0" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26 ruby27" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, MAKEOPTS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Can you give more information about your setup? Although not certain, I guess this may not be mpi4py specific. Are you using openmpi with slurm? What's your openmpi configuration?
(In reply to Alex Fan from comment #2) > Can you give more information about your setup? Although not certain, I > guess this may not be mpi4py specific. Are you using openmpi with slurm? > What's your openmpi configuration? I'm not sure what was installed at the time when this package was tested, it's possible it was openmpi with slurm but I can't confirm
