Bug 831723 – sci-libs/dealii-9.3.1-r4 fails to compile: llvm issue?

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Agostino Sarubbo 2022-01-21 11:32:17 UTC]

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-libs/dealii-9.3.1-r4 fails to compile.
Discovered on: amd64 (internal ref: tinderbox)

NOTE:
This machine uses CLANG as a compiler and LLD as a linker

[Comment 1 Agostino Sarubbo 2022-01-21 11:32:20 UTC]

Created attachment 762988 [details]
build.log

build log and emerge --info

[Comment 2 Agostino Sarubbo 2022-01-21 11:32:21 UTC]

Created attachment 762989 [details]
1-CMakeError.log

1-CMakeError.log

[Comment 3 Agostino Sarubbo 2022-01-21 11:33:13 UTC]

CC'ing llvm team:


PLEASE submit a bug report to https://bugs.llvm.org/ and include the crash backtrace, preprocessed source, and associated run script.
Stack dump:
0.	Program arguments: /usr/lib/llvm/13/bin/x86_64-pc-linux-gnu-clang++ -DBOOST_NO_AUTO_PTR -DDEBUG -I/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1_build/source/grid -I/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1_build/include -I/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1/include -I/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1/bundled/tbb-2018_U2/include -pedantic -fPIC -Wall -Wextra -Wmissing-braces -Woverloaded-virtual -Wpointer-arith -Wsign-compare -Wsuggest-override -Wswitch -Wsynth -Wwrite-strings -Wno-deprecated-declarations -Wno-psabi -Wfloat-conversion -Qunused-arguments -Wno-unsupported-friend -Wno-undefined-var-template -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -mavx2 -Wno-parentheses -Wno-unused-local-typedefs -Og -ggdb -Wa,--compress-debug-sections -MD -MT source/grid/CMakeFiles/obj_grid_debug.dir/grid_generator.cc.o -MF source/grid/CMakeFiles/obj_grid_debug.dir/grid_generator.cc.o.d -o source/grid/CMakeFiles/obj_grid_debug.dir/grid_generator.cc.o -c /var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1/source/grid/grid_generator.cc
1.	/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1/source/grid/grid_generator.cc:6094:3: current parser token 'template'
2.	/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1/source/grid/grid_generator.cc:34:1 <Spelling=/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1_build/include/deal.II/base/config.h:396:32>: parsing namespace 'dealii'
3.	/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1/source/grid/grid_generator.cc:40:1: parsing namespace 'dealii::GridGenerator'
4.	/var/tmp/portage/sci-libs/dealii-9.3.1-r4/work/dealii-9.3.1/source/grid/grid_generator.cc:73:3: parsing function body 'dealii::GridGenerator::hyper_shell<3>'
malloc(): unaligned tcache chunk detected

[Comment 4 Matthias Maier 2022-02-14 01:40:04 UTC]

This is interesting.

On a side note: At the time of compilation your tinderbox had only about 32GB of memory free but you issued -j16 parallel jobs. Some of the compilation units of deal.II require more than 2GiB of main memory at the moment. So if you got unlucky the build process might have triggered the OOM killer. On the other hand, there seems to be no killed process due to OOM.(?)