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Bug 830878 - media-video/vidcutter-6.0.5.1 fails to emerge
Summary: media-video/vidcutter-6.0.5.1 fails to emerge
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Linux bug wranglers
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2022-01-09 21:41 UTC by Chris Smith
Modified: 2022-01-10 00:11 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Chris Smith 2022-01-09 21:41:10 UTC
>>> Emerging (1 of 1) media-video/vidcutter-6.0.5.1::gentoo
Exception in callback

Reproducible: Always

Actual Results:  
>>> Emerging (1 of 1) media-video/vidcutter-6.0.5.1::gentoo
Exception in callback _EbuildFetcherProcess.async_already_fetched.<locals>.uri_map_done(<Future finis....tar.gz',))])>) at /usr/lib/python3.9/site-packages/_emerge/EbuildFetcher.py:120
handle: <Handle _EbuildFetcherProcess.async_already_fetched.<locals>.uri_map_done(<Future finis....tar.gz',))])>) at /usr/lib/python3.9/site-packages/_emerge/EbuildFetcher.py:120>
Traceback (most recent call last):
  File "/usr/lib/python3.9/asyncio/events.py", line 80, in _run
    self._context.run(self._callback, *self._args)
  File "/usr/lib/python3.9/site-packages/_emerge/EbuildFetcher.py", line 132, in uri_map_done
    result.set_result(self._check_already_fetched(settings, uri_map))
  File "/usr/lib/python3.9/site-packages/_emerge/EbuildFetcher.py", line 186, in _check_already_fetched
    ok, st = _check_distfile(
  File "/usr/lib/python3.9/site-packages/portage/package/ebuild/fetch.py", line 373, in _check_distfile
    if _check_digests(filename, digests, show_errors=show_errors):
  File "/usr/lib/python3.9/site-packages/portage/package/ebuild/fetch.py", line 329, in _check_digests
    verified_ok, reason = verify_all(filename, digests)
  File "/usr/lib/python3.9/site-packages/portage/checksum.py", line 524, in verify_all
    myhash = perform_checksum(filename, x, calc_prelink=calc_prelink)[0]
  File "/usr/lib/python3.9/site-packages/portage/checksum.py", line 584, in perform_checksum
    myhash, mysize = hashfunc_map[hashname].checksum_file(myfilename)
  File "/usr/lib/python3.9/site-packages/portage/checksum.py", line 95, in checksum_file
    data = f.read(blocksize)
OSError: [Errno 5] Input/output error
Terminated


$ emerge --info
Portage 3.0.30 (python 3.9.9-final-0, default/linux/amd64/17.1/desktop/plasma/systemd, gcc-11.2.1, glibc-2.34-r4, 5.15.12-gentoo x86_64)
=================================================================
System uname: Linux-5.15.12-gentoo-x86_64-AMD_Ryzen_9_5900X_12-Core_Processor-with-glibc2.34
KiB Mem:    65873816 total,  17697524 free
KiB Swap:    6291452 total,   6291452 free
Timestamp of repository gentoo: Sun, 09 Jan 2022 21:14:43 +0000
Head commit of repository gentoo: baa499fdde9c0b25e36d9d513bb8a8d4a28d813f

Head commit of repository audio-overlay: 6a99adb585566300b6c6a47c8253add4ee31b9f2

sh bash 5.1_p16
ld GNU ld (Gentoo 2.37_p1 p1) 2.37
app-misc/pax-utils:        1.3.3::gentoo
app-shells/bash:           5.1_p16::gentoo
dev-java/java-config:      2.3.1::gentoo
dev-lang/perl:             5.34.0-r6::gentoo
dev-lang/python:           2.7.18_p13::gentoo, 3.8.12_p1-r1::gentoo, 3.9.9-r1::gentoo, 3.10.1-r3::gentoo
dev-lang/rust:             1.57.0::gentoo
dev-util/cmake:            3.22.1::gentoo
dev-util/meson:            0.60.3::gentoo
sys-apps/baselayout:       2.8::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-apps/systemd:          250.1::gentoo
sys-devel/autoconf:        2.13-r1::gentoo, 2.71-r1::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.37_p1-r1::gentoo
sys-devel/binutils-config: 5.4::gentoo
sys-devel/clang:           13.0.0::gentoo
sys-devel/gcc:             11.2.1_p20211127::gentoo
sys-devel/gcc-config:      2.5-r1::gentoo
sys-devel/libtool:         2.4.6-r6::gentoo
sys-devel/lld:             13.0.0::gentoo
sys-devel/llvm:            13.0.0::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.15-r3::gentoo (virtual/os-headers)
sys-libs/glibc:            2.34-r4::gentoo
Repositories:

gentoo
    location: /var/db/repos/gentoo
    sync-type: git
    sync-uri: https://anongit.gentoo.org/git/repo/sync/gentoo.git
    priority: -1000

audio-overlay
    location: /var/db/repos/audio-overlay
    sync-type: git
    sync-uri: https://github.com/gentoo-audio/audio-overlay.git
    masters: gentoo

local
    location: /var/db/repos/local
    masters: gentoo

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA"
AR="ar"
CBUILD="x86_64-pc-linux-gnu"
CC="gcc"
CFLAGS="-O2 -march=native -fomit-frame-pointer -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXX="g++"
CXXFLAGS="-O2 -march=native -fomit-frame-pointer -pipe"
DISTDIR="/var/cache/distfiles"
EMERGE_DEFAULT_OPTS="--with-bdeps y --autounmask-keep-masks"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg-live clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.osuosl.org/"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O2 -Wl,--as-needed"
LINGUAS="en_US en"
MAKEOPTS="-j7"
NM="nm"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
RANLIB="ranlib"
SHELL="/bin/bash"
USE="X a52 aac aalib acl acpi activities alsa amd64 amr apache2 audiofile bash-completion bluray branding btrfs bzip2 cairo caps cdaudio cdda cddb cdparanoia cdr cdrdao chm chromecast cleartype cli corefonts crypt cups curl dbus declarative djvu dri dssi dts dv dvb dvd dvdr ebook egl emboss encode exif fam fdk ffmpeg flac fortran gdbm gif gles2 gmp google gphoto2 gpm gstreamer gtk gtk3 gui iconv icu imagemagick imap imlib introspection ipv6 jack java jpeg jpeg2k kde kipi kpathsea kvm kwallet ladspa lame lash lcms libffi libglvnd libinput libnotify libtirpc linguas_en_US lm-sensors lv2 lzma mad marble midi mmap mng mozilla mp3 mp4 mpeg mtp multimedia musicbrainz ncurses network nls nodrm nptl nsplugin nvenc nvidia ofx ogg opencl openexr opengl openmp opus pam pango pcre pdf plasma png policykit ppds pulseaudio qemu qml qt5 readline rtmp sasl scanner sdl seccomp semantic-desktop slp smp sndfile speex spell split-usr ssl startup-notification subversion svg systemd theora threads tiff tk transparency truetype type1 udev udisks unicode unwind upower usb v4l vaapi vcd vdpau vim-syntax vorbis vpx vst wav wavpack wayland webp widgets wmf wxwidgets x264 x265 xattr xcb xcomposite xine xkb xml xscreensaver xv xvid xvmc zlib" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt rdrand sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput wacom" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" NGINX_MODULES_HTTP="autoindex fancyindex fastcgi gzip" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="(-python2_7) (-python3_6) (-python3_7) (-python3_8) python3_9" QEMU_SOFTMMU_TARGETS="x86_64" QEMU_USER_TARGETS="x86_64" RUBY_TARGETS="(-ruby23) (-ruby24) (-ruby25) (-ruby26) (-ruby27) ruby30" SANE_BACKENDS="epson epson2" USERLAND="GNU" VIDEO_CARDS="nvidia nouveau" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  ADDR2LINE, ARFLAGS, AS, ASFLAGS, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, INSTALL_MASK, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, MAKE, MAKEFLAGS, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS
Comment 1 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-01-09 21:49:05 UTC
This doesn't look specific to vidcutter.

```
    myhash, mysize = hashfunc_map[hashname].checksum_file(myfilename)
  File "/usr/lib/python3.9/site-packages/portage/checksum.py", line 95, in checksum_file
    data = f.read(blocksize)
OSError: [Errno 5] Input/output error
Terminated
```

Something weird about your PORTAGE_TMPDIR? Any I/O errors in dmesg?
Comment 2 Chris Smith 2022-01-09 21:58:35 UTC
(In reply to Sam James from comment #1)
> This doesn't look specific to vidcutter.
> 
> ```
>     myhash, mysize = hashfunc_map[hashname].checksum_file(myfilename)
>   File "/usr/lib/python3.9/site-packages/portage/checksum.py", line 95, in
> checksum_file
>     data = f.read(blocksize)
> OSError: [Errno 5] Input/output error
> Terminated
> ```
> 
> Something weird about your PORTAGE_TMPDIR? Any I/O errors in dmesg?

Something weird, I've emerge a bunch of updates but when I try vidcutter I do get these:
[   92.123898] blk_update_request: critical medium error, dev nvme0n1, sector 1084616800 op 0x0:(READ) flags 0x0 phys_seg 1 prio class 0
[   92.271016] blk_update_request: critical medium error, dev nvme0n1, sector 1084616800 op 0x0:(READ) flags 0x0 phys_seg 1 prio class 0

There is no PORTAGE_TMPDIR defined in my environment.
Comment 3 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2022-01-09 22:05:21 UTC
(In reply to Chris Smith from comment #2)
> (In reply to Sam James from comment #1)
> > This doesn't look specific to vidcutter.
> > 
> > ```
> >     myhash, mysize = hashfunc_map[hashname].checksum_file(myfilename)
> >   File "/usr/lib/python3.9/site-packages/portage/checksum.py", line 95, in
> > checksum_file
> >     data = f.read(blocksize)
> > OSError: [Errno 5] Input/output error
> > Terminated
> > ```
> > 
> > Something weird about your PORTAGE_TMPDIR? Any I/O errors in dmesg?
> 
> Something weird, I've emerge a bunch of updates but when I try vidcutter I
> do get these:
> [   92.123898] blk_update_request: critical medium error, dev nvme0n1,
> sector 1084616800 op 0x0:(READ) flags 0x0 phys_seg 1 prio class 0
> [   92.271016] blk_update_request: critical medium error, dev nvme0n1,
> sector 1084616800 op 0x0:(READ) flags 0x0 phys_seg 1 prio class 0
> 

I think your SSD is failing and the distfile is on a bad part of the disk.

> There is no PORTAGE_TMPDIR defined in my environment.

That's fine, just sometimes people set it to something special / mount a tmpfs there.
Comment 4 Chris Smith 2022-01-09 22:08:11 UTC
(In reply to Sam James from comment #3)
> (In reply to Chris Smith from comment #2)
> > (In reply to Sam James from comment #1)
> > > This doesn't look specific to vidcutter.
> > > 
> > > ```
> > >     myhash, mysize = hashfunc_map[hashname].checksum_file(myfilename)
> > >   File "/usr/lib/python3.9/site-packages/portage/checksum.py", line 95, in
> > > checksum_file
> > >     data = f.read(blocksize)
> > > OSError: [Errno 5] Input/output error
> > > Terminated
> > > ```
> > > 
> > > Something weird about your PORTAGE_TMPDIR? Any I/O errors in dmesg?
> > 
> > Something weird, I've emerge a bunch of updates but when I try vidcutter I
> > do get these:
> > [   92.123898] blk_update_request: critical medium error, dev nvme0n1,
> > sector 1084616800 op 0x0:(READ) flags 0x0 phys_seg 1 prio class 0
> > [   92.271016] blk_update_request: critical medium error, dev nvme0n1,
> > sector 1084616800 op 0x0:(READ) flags 0x0 phys_seg 1 prio class 0
> > 
> 
> I think your SSD is failing and the distfile is on a bad part of the disk.
> 
> > There is no PORTAGE_TMPDIR defined in my environment.
> 
> That's fine, just sometimes people set it to something special / mount a
> tmpfs there.

Yes, porttmpfs on /var/tmp/portage type tmpfs

It's looking like you're right, jeez, brand new system this summer.
Comment 5 Jonas Stein gentoo-dev 2022-01-10 00:11:43 UTC
closing, because it seems to be no problem with the package