The build fails with a cuda related error. #$ cicc --c++17 --gnu_version=110201 --orig_src_file_name "/var/tmp/portage/media-libs/opensubdiv-3.4.4-r2/wor k/OpenSubdiv-3_4_4/opensubdiv/osd/cudaKernel.cu" --allow_managed -arch compute_35 -m64 --no-version-ident -f tz=0 -prec_div=1 -prec_sqrt=1 -fmad=1 --include_file_name "tmpxft_000001ca_00000000-3_cudaKernel.fatbin.c" -tu sed --gen_module_id_file --module_id_file_name "/var/tmp/portage/media-libs/opensubdiv-3.4.4-r2/temp/tmpxft_00 0001ca_00000000-4_cudaKernel.module_id" --gen_c_file_name "/var/tmp/portage/media-libs/opensubdiv-3.4.4-r2/tem p/tmpxft_000001ca_00000000-6_cudaKernel.cudafe1.c" --stub_file_name "/var/tmp/portage/media-libs/opensubdiv-3. 4.4-r2/temp/tmpxft_000001ca_00000000-6_cudaKernel.cudafe1.stub.c" --gen_device_file_name "/var/tmp/portage/med ia-libs/opensubdiv-3.4.4-r2/temp/tmpxft_000001ca_00000000-6_cudaKernel.cudafe1.gpu" "/var/tmp/portage/media-l ibs/opensubdiv-3.4.4-r2/temp/tmpxft_000001ca_00000000-7_cudaKernel.cpp1.ii" -o "/var/tmp/portage/media-libs/op ensubdiv-3.4.4-r2/temp/tmpxft_000001ca_00000000-6_cudaKernel.ptx" /usr/include/stdio.h(183): error: attribute "__malloc__" does not take arguments The last line repeated 12 more times, then: 13 errors detected in the compilation of "/var/tmp/portage/media-libs/opensubdiv-3.4.4-r2/work/OpenSubdiv-3_4_4/opensubdiv/osd/cudaKernel.cu". # --error 0x1 -- -- Removing /var/tmp/portage/media-libs/opensubdiv-3.4.4-r2/work/OpenSubdiv-3_4_4_build/opensubdiv/CMakeFiles/osd_dynamic_gpu.dir/osd/./osd_dynamic_gpu_generated_cudaKernel.cu.o /usr/bin/cmake -E rm -f /var/tmp/portage/media-libs/opensubdiv-3.4.4-r2/work/OpenSubdiv-3_4_4_build/opensubdiv/CMakeFiles/osd_dynamic_gpu.dir/osd/./osd_dynamic_gpu_generated_cudaKernel.cu.o CMake Error at osd_dynamic_gpu_generated_cudaKernel.cu.o.RelWithDebInfo.cmake:280 (message): Error generating file /var/tmp/portage/media-libs/opensubdiv-3.4.4-r2/work/OpenSubdiv-3_4_4_build/opensubdiv/CMakeFiles/osd_dynamic_gpu.dir/osd/./osd_dynamic_gpu_generated_cudaKernel.cu.o make[2]: *** [opensubdiv/CMakeFiles/osd_dynamic_gpu.dir/build.make:84: opensubdiv/CMakeFiles/osd_dynamic_gpu.dir/osd/osd_dynamic_gpu_generated_cudaKernel.cu.o] Error 1 Reproducible: Always emerge --info opensubdiv: Portage 3.0.28 (python 3.9.9-final-0, default/linux/amd64/17.1/systemd, gcc-11.2.1, glibc-2.34-r3, 5.15.6-gentoo-0 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-5.15.6-gentoo-0-x86_64-AMD_FX-tm-8350_Eight-Core_Processor-with-glibc2.34 KiB Mem: 16292304 total, 2977976 free KiB Swap: 16777208 total, 14722904 free Head commit of repository guru: 35c8a0995fde74ddfd92a2d312b85b97ed156cc2 Timestamp of repository sage-on-gentoo: Thu, 04 Nov 2021 23:06:25 +0000 Head commit of repository sage-on-gentoo: 7628ac7bd2c23204690228f6c11ea3eed2581142 Timestamp of repository torbrowser: Mon, 15 Nov 2021 18:36:28 +0000 Head commit of repository torbrowser: ca3bf06665fb5ed0d866fa2ca9c9245290537ff3 Head commit of repository cg: 8ad5fa36dc7a25ea156edf2483c61b52613884c9 Timestamp of repository gamerlay: Thu, 02 Dec 2021 16:51:39 +0000 Head commit of repository gamerlay: 819bea19e7c4b714c8df1cb5836c1e4a272d528a Timestamp of repository steam-overlay: Tue, 09 Nov 2021 10:53:07 +0000 Head commit of repository steam-overlay: b21d724e69a176a398cae2db70172cb9dfede48a Head commit of repository qt: 36b75f925c082a01ab9c0d20226bd2c73bcc8a16 Head commit of repository science: 7d85f8b46bafbba14fc9fe866630fc78b6ee5d33 Head commit of repository enlightenment-live: d01b7983447ad1ae544263139d5de54fbdd934ad Timestamp of repository fem-overlay: Sun, 21 Nov 2021 21:36:36 +0000 Head commit of repository fem-overlay: 807e5dd5df901de9a5b2f8adc53452fd20a98943 Head commit of repository gentoo-git: 17193b1faaf23b13139006c0c758467d640ff240 Head commit of repository waebbl: 5ea1f89f0097fcf431fc3c8f8437a28916c4c882 Timestamp of repository gentoo: Sat, 04 Dec 2021 10:36:39 +0000 Head commit of repository gentoo: 8dd2aad836afbd5d6bce81cce3970ce1cdecebd7 sh bash 5.1_p12 ld GNU ld (Gentoo 2.37_p1 p1) 2.37 app-shells/bash: 5.1_p12::gentoo dev-java/java-config: 2.3.1::gentoo dev-lang/perl: 5.34.0-r5::gentoo dev-lang/python: 2.7.18_p13::gentoo, 3.9.9::gentoo, 3.10.0_p1::gentoo dev-lang/rust-bin: 1.56.1::gentoo dev-util/cmake: 3.22.0::gentoo sys-apps/baselayout: 2.8::gentoo sys-apps/sandbox: 2.29::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.71-r1::gentoo sys-devel/automake: 1.16.5::gentoo sys-devel/binutils: 2.37_p1-r1::gentoo sys-devel/gcc: 10.3.0-r2::gentoo, 11.2.1_p20211127::gentoo sys-devel/gcc-config: 2.5-r1::gentoo sys-devel/libtool: 2.4.6-r6::gentoo sys-devel/make: 4.3::gentoo sys-kernel/linux-headers: 5.15-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.34-r3::gentoo Repositories: guru location: /mnt/data/code/github/portage-overlays/guru sync-type: git sync-uri: git@git.gentoo.org:repo/proj/guru.git masters: gentoo priority: -1000 sage-on-gentoo location: /mnt/data/code/github/portage-overlays/sage-on-gentoo sync-type: git sync-uri: https://github.com/gentoo-mirror/sage-on-gentoo.git masters: gentoo torbrowser location: /var/db/repos/torbrowser sync-type: git sync-uri: https://github.com/gentoo-mirror/torbrowser.git masters: gentoo cg location: /mnt/data/code/github/portage-overlays/cg sync-type: git sync-uri: https://github.com/waebbl/cg.git masters: gentoo priority: 30 gamerlay location: /var/db/repos/gamerlay sync-type: git sync-uri: https://github.com/gentoo-mirror/gamerlay.git masters: gentoo priority: 30 steam-overlay location: /var/db/repos/steam-overlay sync-type: git sync-uri: https://github.com/gentoo-mirror/steam-overlay.git masters: gentoo priority: 50 qt location: /mnt/data/code/github/portage-overlays/qt sync-type: git sync-uri: https://github.com/gentoo-mirror/qt.git masters: gentoo priority: 60 science location: /mnt/data/code/github/portage-overlays/sci sync-type: git sync-uri: git://github.com/waebbl/sci.git masters: gentoo priority: 60 enlightenment-live location: /mnt/data/code/github/portage-overlays/enlightenment-live sync-type: git sync-uri: git://github.com/waebbl/enlightenment-live.git masters: gentoo priority: 61 fem-overlay location: /var/db/repos/fem-overlay sync-type: git sync-uri: https://github.com/gentoo-mirror/fem-overlay.git masters: gentoo priority: 70 gentoo-git location: /mnt/data/code/github/portage-overlays/gentoo-git sync-type: git sync-uri: https://github.com/waebbl/gentoo.git masters: gentoo priority: 99 waebbl location: /mnt/data/code/github/portage-overlays/waebbl sync-type: git sync-uri: https://github.com/waebbl/waebbl-gentoo.git masters: gentoo priority: 99 gentoo location: /var/db/repos/gentoo sync-type: git sync-uri: https://github.com/gentoo-mirror/gentoo.git priority: 100 Installed sets: @3D, @XWindow, @adm-tools, @android, @base, @benchmarking, @bgeedeps, @desktop, @dev-tools, @doc-tools, @docs, @emacs, @fonts, @fun, @games, @infinity, @kde, @keep, @kernel-dep, @langs, @lxqt-live, @media, @my_latex, @netz, @nvidia, @office, @python, @qt, @sci, @sec, @server, @steam, @themes, @vcs, @virt, @xfce, @zip ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-O2 -pipe -march=bdver2 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sandbox sfperms sign split-elog split-log strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -march=bdver2 -frecord-gcc-switches -fstack-protector-strong -fstack-check" GENTOO_MIRRORS="https://ftp-stud.hs-esslingen.de/pub/Mirrors/gentoo/ https://linux.rz.ruhr-uni-bochum.de/download/gentoo-mirror/ https://mirror.netcologne.de/gentoo/ https://mirror.eu.oneandone.net/linux/distributions/gentoo/gentoo/" INSTALL_MASK="/usr/share/locale -/usr/share/locale/de* -/usr/share/locale/en*" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" MAKEOPTS="-j2" PKGDIR="/mnt/data/cache/binpkgs/desktop" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X acl alsa amd64 branding bzip2 cli crypt dbus dri egl fortran gdbm gif gnome iconv ipv6 jpeg jpeg2k kde libglvnd libinput libtirpc multilib ncurses networkmanager nls nptl offensive ogg opengl openmp pam pcre pic png policykit postgres pulseaudio python qt5 readline seccomp sound split-usr ssl svg systemd tga theora threads tiff udev unicode vorbis wayland wifi x264 x265 xattr xpm zlib" ABI_X86="64" ADA_TARGET="gnat_2020" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="*" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx f16c fma3 fma4 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3 xop" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc multiboot qemu" INPUT_DEVICES="libinput wacom" KERNEL="linux" L10N="de de-DE en en-GB en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver" LLVM_TARGETS="NVPTX WebAssembly" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" NGINX_MODULES_HTTP="access addition auth_basic auth_pam autoindex browser cache_purge charset dav dav_ext echo empty_gif fancyindex fastcgi flv geo geoip2 gunzip gzip headers_more image_filter javascript limit_conn limit_req map memc memcached metrics mp4 naxsi proxy push_stream realip referer rewrite scgi secure_link slowfs_cache split_clients ssi sticky stub_status sub upload_progress userid uwsgi xslt" NGINX_MODULES_STREAM="access geo geoip2 javascript limit_conn map return split_clients" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" QEMU_SOFTMMU_TARGETS="aarch64 arm i386 sparc sparc64 x86_64" QEMU_USER_TARGETS="aarch64 aarch64_be arm armeb i386 sparc sparc32plus sparc64 x86_64" RUBY_TARGETS="ruby26 ruby27" STEAMGAMES="witcher2" USERLAND="GNU" VIDEO_CARDS="dummy fbdev nvidia vesa" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS ================================================================= Package Settings ================================================================= media-libs/opensubdiv-3.4.4-r1::waebbl was built with the following: USE="cuda opencl openmp ptex tbb -examples -test -tutorials" ABI_X86="(64)" FEATURES="usersync cgroup news assume-digests buildsyspkg split-log sfperms ebuild-locks xattr parallel-fetch multilib-strict downgrade-backup binpkg-multi-instance protect-owned userfetch qa-unresolved-soname-deps buildpkg binpkg-dostrip fail-clean usersandbox merge-sync ipc-sandbox unknown-features-warn strict-keepdir network-sandbox config-protect-if-modified binpkg-logs strict userpriv unmerge-orphans sandbox split-elog clean-logs distlocks unmerge-logs fixlafiles pid-sandbox preserve-libs binpkg-docompress sign" emerge -pqv opensubdiv: [ebuild U ] media-libs/opensubdiv-3.4.4-r2 [3.4.4-r1] USE="cuda opencl openmp ptex tbb -examples -test -tutorials"
Created attachment 757443 [details] opensubdiv-3.4.4-r2:20211204-130639.log build log
I think this is glibc-2.34 related. I thought it'd been fixed with the newer CUDA updates recently though...
Might be, I have glibc-2.34 installed actually, without the clone3 USE flag being set, because of some binary electron apps, I think.
I will test again, when I updated cuda to 11.5 tomorrow, maybe it's fixed there.
But I do have an opensubdiv, updated from the -r1 from ::gentoo at early November, which build successfully then. Haven't tested though if it still builds. My update of glibc was at the end of November.
The __malloc__ happened with every packages using nvcc if used some common headers like <stdio.h> combined with gcc11 and glibc-2.34 (gcc10, clang, and/or glibc-2.33 were not affected. Couldn't even compile a hello world and such, so of course big packages like this would fail as well. commit fb1cbae4ff83bc89bdd629c8ef90d405a6a56fd7 Author: David Seifert <soap@gentoo.org> Date: Fri Nov 26 21:16:48 2021 +0100 dev-util/nvidia-cuda-toolkit: add 11.5.1 * fixes issues with glibc 2.34: https://forums.developer.nvidia.com/t/cuda-11-5-samples-throw-multiple-error-attribute-malloc-does-not-take-arguments/192750
And cuda10 isn't affected given it can't use gcc11 either way (gcc8+glibc-2.34 doesn't trigger __malloc__ issues) So I think this can be marked obsolete.
I understand. Using cuda-11.4, glibc-2.34 and gcc-11 here, so this combination triggers the issue. Thanks for the feedback.
(In reply to Bernd from comment #8) > I understand. Using cuda-11.4, glibc-2.34 and gcc-11 here, so this > combination triggers the issue. Yeah, now that cuda 11.5 restrictions were lowered hopefully 11.4 won't serve much of a purpose and just be due for cleanup.
It builds successfully using gcc-11 and cuda-11.5.1-r1
