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Bug 813222 - sci-chemistry/gromacs-2021.3 - * patch -p1 failed with /var/tmp/portage/sci-chemistry/gromacs-2021.3/files/gromacs-2020-pytest.pa
Summary: sci-chemistry/gromacs-2021.3 - * patch -p1 failed with /var/tmp/portage/sci-...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-09-15 09:59 UTC by Toralf Förster
Modified: 2021-09-16 21:53 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
emerge-info.txt (emerge-info.txt,15.29 KB, text/plain)
2021-09-15 09:59 UTC, Toralf Förster 		Details
emerge-history.txt (emerge-history.txt,159.05 KB, text/plain)
2021-09-15 09:59 UTC, Toralf Förster 		Details
environment (environment,157.59 KB, text/plain)
2021-09-15 09:59 UTC, Toralf Förster 		Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,14.64 KB, application/x-bzip)
2021-09-15 09:59 UTC, Toralf Förster 		Details
sci-chemistry:gromacs-2021.3:20210915-093028.log (sci-chemistry:gromacs-2021.3:20210915-093028.log,3.09 KB, text/plain)
2021-09-15 09:59 UTC, Toralf Förster 		Details
temp.tar.bz2 (temp.tar.bz2,35.34 KB, application/x-bzip)
2021-09-15 09:59 UTC, Toralf Förster 		Details
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Description Toralf Förster gentoo-dev 2021-09-15 09:59:00 UTC 
 [ !! ]
 * ERROR: sci-chemistry/gromacs-2021.3::gentoo failed (prepare phase):
 *   patch -p1  failed with /var/tmp/portage/sci-chemistry/gromacs-2021.3/files/gromacs-2020-pytest.patch
 * 
 * Call stack:
 *               ebuild.sh, line  127:  Called src_prepare
 *             environment, line 4016:  Called cmake_src_prepare

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no_multilib-j4-20210913-230008

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.0 *
clang version 12.0.1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
/usr/lib/llvm/12
12.0.1
Python 3.9.7
Available Ruby profiles:
  (none found)
Available Rust versions:
  [1]   rust-1.55.0 *
The Glorious Glasgow Haskell Compilation System, version 8.10.4

  HEAD of ::gentoo
commit 593860a96a5806cf26591821b9abffdb24064d12
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Wed Sep 15 08:06:32 2021 +0000

    2021-09-15 08:06:30 UTC

emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2021.3  USE="custom-cflags doc gmxapi gmxapi-legacy hwloc lmfit offensive openmp single-precision threads tng -X -blas -build-manual -cuda -double-precision -fftw -lapack -mkl -mpi -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_9 -python3_8"
Comment 1 Toralf Förster gentoo-dev 2021-09-15 09:59:01 UTC 
Created attachment 739371 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-09-15 09:59:03 UTC 
Created attachment 739374 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2021-09-15 09:59:04 UTC 
Created attachment 739377 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2021-09-15 09:59:05 UTC 
Created attachment 739380 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2021-09-15 09:59:07 UTC 
Created attachment 739383 [details]
sci-chemistry:gromacs-2021.3:20210915-093028.log
Comment 6 Toralf Förster gentoo-dev 2021-09-15 09:59:08 UTC 
Created attachment 739386 [details]
temp.tar.bz2