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Bug 809854 - dev-python/pandas-1.3.1: tests fail with "ValueError: Buffer dtype mismatch, expected 'int64_t' but got 'int'" and similar
Summary: dev-python/pandas-1.3.1: tests fail with "ValueError: Buffer dtype mismatch, ...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks:
 
Reported: 2021-08-23 19:14 UTC by Rolf Eike Beer
Modified: 2021-10-20 18:21 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log, first part (build.log.xz.0,976.56 KB, application/x-xz)
2021-08-23 19:14 UTC, Rolf Eike Beer
Details
build.log, second part (build.log.xz.1,863.40 KB, application/octet-stream)
2021-08-23 19:14 UTC, Rolf Eike Beer
Details

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Description Rolf Eike Beer archtester 2021-08-23 19:14:08 UTC
Created attachment 735478 [details]
build.log, first part

Portage 3.0.20 (python 3.9.6-final-0, default/linux/sparc/17.0, gcc-11.1.0, glibc-2.33-r1, 5.13.0-gentoo-r1-sparc64 sparc64)
=================================================================
System uname: Linux-5.13.0-gentoo-r1-sparc64-sparc64-sun4v-with-glibc2.33
KiB Mem:    33076584 total,  28485096 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Mon, 23 Aug 2021 00:15:01 +0000
Head commit of repository gentoo: 33fa09b0dc127aba68a045f84032ed2fd1811cd2
sh bash 5.1_p8
ld GNU ld (Gentoo 2.36.1 p3) 2.36.1
app-shells/bash:          5.1_p8::gentoo
dev-lang/perl:            5.34.0-r1::gentoo
dev-lang/python:          2.7.18_p11::gentoo, 3.8.11::gentoo, 3.9.6::gentoo, 3.10.0_beta4::gentoo
dev-util/cmake:           3.21.0::gentoo
sys-apps/baselayout:      2.7-r3::gentoo
sys-apps/openrc:          0.43.3::gentoo
sys-apps/sandbox:         2.24::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.16.3-r1::gentoo
sys-devel/binutils:       2.36.1-r1::gentoo
sys-devel/gcc:            9.3.0-r2::gentoo, 11.1.0-r2::gentoo
sys-devel/gcc-config:     2.4::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.3::gentoo
sys-kernel/linux-headers: 5.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.33-r1::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.de.gentoo.org/gentoo-portage/
    priority: -1000
    sync-rsync-extra-opts: 
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-verify-max-age: 24

qt
    location: /var/lib/layman/qt
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="sparc ~sparc"
ACCEPT_LICENSE="*"
CBUILD="sparc-unknown-linux-gnu"
CFLAGS="-O2 -mcpu=niagara2 -pipe"
CHOST="sparc-unknown-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/qmail/alias /var/qmail/control /var/vpopmail/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -mcpu=niagara2 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS=""
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS=""
GENTOO_MIRRORS="ftp://ftp.wh2.tu-dresden.de/pub/mirrors/gentoo ftp://ftp.join.uni-muenster.de/pub/linux/distributions/gentoo"
LANG="en_US.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j20 -l40"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl big-endian bzip2 cli crypt dri fortran gdbm iconv ipv6 libglvnd libtirpc llvm-libunwind ncurses nls nptl openmp pam pcre readline sparc split-usr ssl tcpd unicode xattr zlib" ADA_TARGET="gnat_2018" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LUA_SINGLE_TARGET="lua5-1" LUA_TARGETS="lua5-1" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3 php7-4" POSTGRES_TARGETS="postgres12 postgres13" PYTHON_SINGLE_TARGET="python3_9" PYTHON_TARGETS="python3_9" RUBY_TARGETS="ruby26" USERLAND="GNU" VIDEO_CARDS="fbdev glint mga r128 radeon dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq proto steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS
Comment 1 Rolf Eike Beer archtester 2021-08-23 19:14:35 UTC
Created attachment 735481 [details]
build.log, second part
Comment 2 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-10-20 05:56:04 UTC
Can you test 1.3.4 and if it fails report this upstream?
Comment 3 Rolf Eike Beer archtester 2021-10-20 18:21:56 UTC
1.3.4 has an entirely different error:

scheduling tests via LoadScheduling
INTERNALERROR> Traceback (most recent call last):
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/execnet/gateway_base.py", line 997, in _send
INTERNALERROR>     message.to_io(self._io)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/execnet/gateway_base.py", line 443, in to_io
INTERNALERROR>     io.write(header + self.data)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/execnet/gateway_base.py", line 410, in write
INTERNALERROR>     self.outfile.flush()
INTERNALERROR> BrokenPipeError: [Errno 32] Broken pipe
INTERNALERROR>
INTERNALERROR> During handling of the above exception, another exception occurred:
INTERNALERROR>
INTERNALERROR> Traceback (most recent call last):
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/_pytest/main.py", line 269, in wrap_session
INTERNALERROR>     session.exitstatus = doit(config, session) or 0
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/_pytest/main.py", line 323, in _main
INTERNALERROR>     config.hook.pytest_runtestloop(session=session)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
INTERNALERROR>     return self._hookexec(self, self.get_hookimpls(), kwargs)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
INTERNALERROR>     return self._inner_hookexec(hook, methods, kwargs)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
INTERNALERROR>     self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/pluggy/callers.py", line 208, in _multicall
INTERNALERROR>     return outcome.get_result()
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/pluggy/callers.py", line 80, in get_result
INTERNALERROR>     raise ex[1].with_traceback(ex[2])
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
INTERNALERROR>     res = hook_impl.function(*args)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/xdist/dsession.py", line 112, in pytest_runtestloop
INTERNALERROR>     self.loop_once()
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/xdist/dsession.py", line 135, in loop_once
INTERNALERROR>     call(**kwargs)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/xdist/dsession.py", line 256, in worker_collectionfinish
INTERNALERROR>     self.sched.schedule()
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/xdist/scheduler/load.py", line 257, in schedule
INTERNALERROR>     self._send_tests(next(nodes), 1)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/xdist/scheduler/load.py", line 269, in _send_tests
INTERNALERROR>     node.send_runtest_some(tests_per_node)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/xdist/workermanage.py", line 284, in send_runtest_some
INTERNALERROR>     self.sendcommand("runtests", indices=indices)
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/xdist/workermanage.py", line 300, in sendcommand
INTERNALERROR>     self.channel.send((name, kwargs))
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/execnet/gateway_base.py", line 729, in send
INTERNALERROR>     self.gateway._send(Message.CHANNEL_DATA, self.id, dumps_internal(item))
INTERNALERROR>   File "/usr/lib/python3.9/site-packages/execnet/gateway_base.py", line 1003, in _send
INTERNALERROR>     raise IOError("cannot send (already closed?)")
INTERNALERROR> OSError: cannot send (already closed?)