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Bug 794868 - sci-biology/fasttree-2.1.11 - FastTree-2.1.11.c:(.text+<snip>): undefined reference to mm_sum
Summary: sci-biology/fasttree-2.1.11 - FastTree-2.1.11.c:(.text+<snip>): undefined ref...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-06-08 07:09 UTC by Toralf Förster
Modified: 2021-06-08 07:09 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,14.52 KB, text/plain)
2021-06-08 07:09 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,19.52 KB, text/plain)
2021-06-08 07:09 UTC, Toralf Förster
Details
environment (environment,89.25 KB, text/plain)
2021-06-08 07:09 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,16.59 KB, application/x-bzip)
2021-06-08 07:09 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,3.76 KB, application/x-bzip)
2021-06-08 07:09 UTC, Toralf Förster
Details
sci-biology:fasttree-2.1.11:20210608-033818.log (sci-biology:fasttree-2.1.11:20210608-033818.log,7.48 KB, text/plain)
2021-06-08 07:09 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,23.06 KB, application/x-bzip)
2021-06-08 07:09 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-06-08 07:09:43 UTC
: && /usr/bin/x86_64-pc-linux-gnu-gcc -pipe -march=native -fno-diagnostics-color -DOPENMP -fopenmp -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -DOPENMP -fopenmp    -rdynamic CMakeFiles/FastTree.dir/FastTree-2.1.11.c.o -o FastTree  -lm && :
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/FastTree.dir/FastTree-2.1.11.c.o: in function `vector_multiply_sum':
FastTree-2.1.11.c:(.text+0x2a5e0): undefined reference to `mm_sum'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/FastTree.dir/FastTree-2.1.11.c.o: in function `vector_multiply3_sum':
FastTree-2.1.11.c:(.text+0x2a745): undefined reference to `mm_sum'
/usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/FastTree.dir/FastTree-2.1.11.c.o: in function `vector_dot_product_rot':
FastTree-2.1.11.c:(.text+0x2a8f5): undefined reference to `mm_sum'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_systemd-j3-20210607-212225

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.1.0 *
Python 3.9.5
  HEAD of ::gentoo
commit 77b2469bdd445c8c4d36ef4ff696ef81fd9b6267
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Tue Jun 8 03:05:16 2021 +0000

    2021-06-08 03:05:15 UTC

emerge -qpvO sci-biology/fasttree
[ebuild  N    ] sci-biology/fasttree-2.1.11  USE="openmp -double-precision" CPU_FLAGS_X86="sse3"
Comment 1 Toralf Förster gentoo-dev 2021-06-08 07:09:44 UTC
Created attachment 714408 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-06-08 07:09:45 UTC
Created attachment 714411 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2021-06-08 07:09:47 UTC
Created attachment 714414 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2021-06-08 07:09:48 UTC
Created attachment 714417 [details]
etc.portage.tar.bz2
Comment 5 Toralf Förster gentoo-dev 2021-06-08 07:09:49 UTC
Created attachment 714420 [details]
logs.tar.bz2
Comment 6 Toralf Förster gentoo-dev 2021-06-08 07:09:50 UTC
Created attachment 714423 [details]
sci-biology:fasttree-2.1.11:20210608-033818.log
Comment 7 Toralf Förster gentoo-dev 2021-06-08 07:09:51 UTC
Created attachment 714426 [details]
temp.tar.bz2