x86_64-pc-linux-gnu-gcc -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 fac.o fasta.o -o fac /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: fac.o: in function `main': fac.c:(.text.startup+0x14b): undefined reference to `Fasta_Read_Entry' /usr/lib/gcc/x86_64-pc-linux-gnu/11.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: fac.c:(.text.startup+0x3db): undefined reference to `Fasta_Write_File' collect2: error: ld returned 1 exit status make[1]: *** [<builtin>: fac] Error 1 make: *** [Makefile:45: fac] Error 2 ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_desktop_gnome-j3_science-20210531-202156 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-11.1.0 * clang version 12.0.0 Target: x86_64-pc-linux-gnu Thread model: posix InstalledDir: /usr/lib/llvm/12/bin /usr/lib/llvm/12 12.0.0 Python 3.9.5 Available Ruby profiles: [1] ruby26 (with Rubygems) [2] ruby30 (with Rubygems) * Available Rust versions: [1] rust-bin-1.52.1 * The following VMs are available for generation-2: *) AdoptOpenJDK 8.292_p10 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm The Glorious Glasgow Haskell Compilation System, version 8.10.4 [1] php7.3 [2] php7.4 [3] php8.0 * HEAD of ::gentoo commit a45a51f1214464ab3a8357980b4cb13116c142eb Author: Repository mirror & CI <repomirrorci@gentoo.org> Date: Fri Jun 4 11:06:03 2021 +0000 2021-06-04 11:06:02 UTC HEAD of ::sci commit abdc869549829df33f2ca5aa2a63663bfc39e2e4 Author: Andrew Ammerlaan <andrewammerlaan@gentoo.org> Date: Tue May 25 20:12:58 2021 +0200 dev-ml/lacaml: add missing dep Closes: https://bugs.gentoo.org/539916 Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> HEAD of ::science commit 4b888966f7c6ff0d86ba8b1802457d946c747bb3 Author: Lucas Mitrak <lucas@lucasmitrak.com> Date: Sun May 30 18:47:25 2021 -0400 sci-libs/fox: add inherit fortran-2 Currently, sci-libs/fox does not require a fortran compiler to be installed. If sci-libs/fox is emerged without the fortran compiler, the configure phase will check for a fortran compiler, and the configure phase will fail. For example, the hardened profile disables the fortran USE flag in sys-devel/gcc, so sci-libs/fox will fail. With this commit, sci-libs/fox will require a fortran compiler to be installed. Without this commit, sci-libs/fox will fail on any system which does not have the fortran compiler, which by default is all hardened profiles. This commit was tested in a docker image with dev-util/ebuildtester. This commit was written, tested, and submitted by Lucas Mitrak. Closes: https://bugs.gentoo.org/757771 Signed-off-by: Lucas Mitrak <lucas@lucasmitrak.com> Closes: https://github.com/gentoo/sci/pull/1083 Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org> emerge -qpvO sci-biology/msautil [ebuild N ] sci-biology/msautil-1.1-r1
Created attachment 713589 [details] emerge-info.txt
Created attachment 713592 [details] emerge-history.txt
Created attachment 713595 [details] environment
Created attachment 713598 [details] etc.portage.tar.bz2
Created attachment 713601 [details] sci-biology:msautil-1.1-r1:20210604-115815.log
Created attachment 713604 [details] temp.tar.bz2
