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Bug 756751 - [science overlay] sci-biology/genepop-4.2.1 :/.../CT_tests.cpp: error: no match for operator!= (operand types are std::ostream {ak
Summary: [science overlay] sci-biology/genepop-4.2.1 :/.../CT_tests.cpp: error: no mat...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-11-25 17:27 UTC by Toralf Förster
Modified: 2021-03-05 22:58 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,18.47 KB, text/plain)
2020-11-25 17:27 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,303.02 KB, text/plain)
2020-11-25 17:27 UTC, Toralf Förster
Details
environment (environment,114.32 KB, text/plain)
2020-11-25 17:27 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,21.51 KB, application/x-bzip)
2020-11-25 17:27 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,4.00 KB, application/x-bzip)
2020-11-25 17:27 UTC, Toralf Förster
Details
sci-biology:genepop-4.2.1:20201125-162331.log (sci-biology:genepop-4.2.1:20201125-162331.log,68.47 KB, text/plain)
2020-11-25 17:27 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,30.71 KB, application/x-bzip)
2020-11-25 17:27 UTC, Toralf Förster
Details
ebuildtester sci-biology/genepop-4.7 emerge log (tester.log.tar.bz2,83.10 KB, application/x-bzip)
2021-03-05 21:51 UTC, Lucas Mitrak
Details
etc/portage (etc-portage.tar.bz2,7.94 KB, application/x-bzip)
2021-03-05 21:53 UTC, Lucas Mitrak
Details
emerge-history.txt (emerge-history.txt.tar.bz2,331 bytes, application/x-bzip)
2021-03-05 21:55 UTC, Lucas Mitrak
Details
emerge-log.txt (emerge.log.tar.bz2,1.05 KB, application/x-bzip)
2021-03-05 21:55 UTC, Lucas Mitrak
Details
emerge --info (emerge--info.txt.tar.bz2,2.79 KB, application/x-bzip)
2021-03-05 21:56 UTC, Lucas Mitrak
Details
emerge --info (file_756751.txt,5.14 KB, text/plain)
2021-03-05 21:58 UTC, Lucas Mitrak
Details

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Description Toralf Förster gentoo-dev 2020-11-25 17:27:11 UTC
In file included from /var/tmp/portage/sci-biology/genepop-4.2.1/work/GenepopS.cpp:70:
/var/tmp/portage/sci-biology/genepop-4.2.1/work/CT_tests.cpp: In member function ‘double Cctable::calc_G_geneDiv_trend(std::ostream&)’:
/var/tmp/portage/sci-biology/genepop-4.2.1/work/CT_tests.cpp:330:13: error: no match for ‘operator!=’ (operand types are ‘std::ostream’ {aka ‘std::basic_ostream<char>’} and ‘std::ostream’ {aka ‘std::basic_ostream<char>’})
  330 |       if(ost!=cerr) ost<<"\nGene diversities per population:\n";
      |          ~~~^~~~~~
      |          |    |

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_no-multilib-libressl_science-20201116-220441

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.3.1
 [2] x86_64-pc-linux-gnu-8.3.1
 [3] x86_64-pc-linux-gnu-10.2.0 *
clang version 11.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/11/bin
/usr/lib/llvm/11
11.0.0
Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.9 (fallback)
  [3]   python3.8 (fallback)
  [4]   python2.7 (fallback)
  [5]   pypy3 (fallback)
Available Rust versions:
  [1]   rust-bin-1.47.0
  [2]   rust-1.47.0 *
The following VMs are available for generation-2:
1)	JamVM JDK 2.0.0 [jamvm]
*)	AdoptOpenJDK 8.272_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   jamvm 
  [2]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.8.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Wed Nov 25 03:35:31 PM UTC 2020
/var/db/repos/libressl	Sat Nov  7 03:06:11 PM UTC 2020

emerge -qpvO sci-biology/genepop
[ebuild  N    ] sci-biology/genepop-4.2.1
Comment 1 Toralf Förster gentoo-dev 2020-11-25 17:27:12 UTC
Created attachment 674977 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-11-25 17:27:14 UTC
Created attachment 674980 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-11-25 17:27:16 UTC
Created attachment 674983 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-11-25 17:27:17 UTC
Created attachment 674986 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-11-25 17:27:18 UTC
Created attachment 674989 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2020-11-25 17:27:20 UTC
Created attachment 674992 [details]
sci-biology:genepop-4.2.1:20201125-162331.log
Comment 7 Toralf Förster gentoo-dev 2020-11-25 17:27:21 UTC
Created attachment 674995 [details]
temp.tbz2
Comment 8 Lucas Mitrak 2021-03-05 21:51:56 UTC
Created attachment 689520 [details]
ebuildtester sci-biology/genepop-4.7 emerge log

This is the log file of a successful emerge of sci-biology/genepop-4.7 in a docker  image of a clean stage3 using ebuildtester. The command used was:
ebuildtester --portage-dir /var/db/repos/gentoo \
--overlay-dir ~/sci \
--threads 3 \
--update \
--pull \
--live-ebuild \
--atom \
sci-biology/genepop
Comment 9 Lucas Mitrak 2021-03-05 21:53:57 UTC
Created attachment 689523 [details]
etc/portage
Comment 10 Lucas Mitrak 2021-03-05 21:55:26 UTC
Created attachment 689526 [details]
emerge-history.txt
Comment 11 Lucas Mitrak 2021-03-05 21:55:49 UTC
Created attachment 689529 [details]
emerge-log.txt
Comment 12 Lucas Mitrak 2021-03-05 21:56:13 UTC
Created attachment 689532 [details]
emerge --info
Comment 13 Lucas Mitrak 2021-03-05 21:58:03 UTC
Created attachment 689535 [details]
emerge --info
Comment 14 Lucas Mitrak 2021-03-05 22:08:31 UTC
This bug report is obsolete due to a package update.

This bug was posted for version 4.2.1. The current version is 4.7. Version 4.7 successfully builds and runs on a clean and current gentoo stage3 image created using ebuildtester. This is my first bug report so please feel free to give me feedback.
Comment 15 Toralf Förster gentoo-dev 2021-03-05 22:58:11 UTC
(In reply to Lucas Mitrak from comment #14)
> This bug report is obsolete due to a package update.
> 
> This bug was posted for version 4.2.1. The current version is 4.7. Version
> 4.7 successfully builds and runs on a clean and current gentoo stage3 image
> created using ebuildtester. This is my first bug report so please feel free
> to give me feedback.

Thx for testing and letting us know.