make[1]: Entering directory '/var/tmp/portage/sci-biology/quorum-1.1.1/work/quorum-1.1.1' x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish -Wall -g -O2 -std=c++0x -O2 -pipe -march=native -fno-diagnostics-color -c -o src/error_correct_reads.o src/error_correct_reads.cc src/error_correct_reads.cc:25:10: fatal error: jellyfish/atomic_gcc.hpp: No such file or directory 25 | #include <jellyfish/atomic_gcc.hpp> | ^~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. ------------------------------------------------------------------- This is an unstable amd64 chroot image at a tinderbox (==build bot) name: 17.1_no-multilib-libressl_science-20201116-220441 ------------------------------------------------------------------- gcc-config -l: [1] x86_64-pc-linux-gnu-10.2.0 * /usr/lib/llvm/11 11.0.0 Available Python interpreters, in order of preference: [1] python3.7 [2] python3.9 (fallback) [3] python3.8 (fallback) [4] python2.7 (fallback) The following VMs are available for generation-2: *) AdoptOpenJDK 8.272_p10 [openjdk-bin-8] Available Java Virtual Machines: [1] openjdk-bin-8 system-vm The Glorious Glasgow Haskell Compilation System, version 8.8.4 timestamp(s) of HEAD at this tinderbox image: /var/db/repos/gentoo Wed Nov 18 08:07:41 AM UTC 2020 /var/db/repos/libressl Sat Nov 7 03:06:11 PM UTC 2020 emerge -qpvO sci-biology/quorum [ebuild N ] sci-biology/quorum-1.1.1
Created attachment 672310 [details] emerge-info.txt
Created attachment 672313 [details] emerge-history.txt
Created attachment 672316 [details] environment
Created attachment 672319 [details] etc.portage.tbz2
Created attachment 672322 [details] logs.tbz2
Created attachment 672325 [details] sci-biology:quorum-1.1.1:20201118-084447.log
Created attachment 672328 [details] temp.tbz2
This bug was fixed in commit https://github.com/gentoo/sci/commit/ab0138b5b38bb3d6b7ef839f590325bb4acb2d6b This was tested successfully by Lucas Mitrak in a docker image using ebuildtester.
