Bug 752150 – sci-biology/gmap-2020.10.27 : file collision with sys-apps/cpuid-20201006

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2020-11-01 20:40:25 UTC]

 * Detected file collision(s):
 * 
 * 	/usr/bin/cpuid
 * 
 * Searching all installed packages for file collisions...
 * 
 * Press Ctrl-C to Stop
 * 
 * sys-apps/cpuid-20201006:0::gentoo
 * 	/usr/bin/cpuid
 * 
 * Package 'sci-biology/gmap-2020.10.27' NOT merged due to file

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma_systemd-libressl_abi32+64-20201024-175914

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-10.2.0 *
clang version 11.0.0
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/11/bin
/usr/lib/llvm/11
11.0.0
Available Python interpreters, in order of preference:
  [1]   python3.7
  [2]   python3.9 (fallback)
  [3]   python3.8 (fallback)
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby25 (with Rubygems)
  [2]   ruby26 (with Rubygems)
  [3]   ruby27 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.47.0 *
The following VMs are available for generation-2:
1)	IcedTea JDK 3.17.0 [icedtea-8]
2)	JamVM JDK 2.0.0 [jamvm]
*)	AdoptOpenJDK 8.272_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-8 
  [2]   jamvm 
  [3]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.8.4

  timestamp(s) of HEAD at this tinderbox image:
/var/db/repos/gentoo	Sun Nov  1 07:35:21 PM UTC 2020
/var/db/repos/libressl	Sun Oct 18 04:35:14 PM UTC 2020

emerge -qpvO sci-biology/gmap
[ebuild  N    ] sci-biology/gmap-2020.10.27

[Comment 1 Toralf Förster 2020-11-01 20:40:26 UTC]

Created attachment 669623 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2020-11-01 20:40:28 UTC]

Created attachment 669626 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2020-11-01 20:40:30 UTC]

Created attachment 669629 [details]
etc.portage.tbz2

[Comment 4 Toralf Förster 2020-11-01 20:40:31 UTC]

Created attachment 669632 [details]
logs.tbz2

[Comment 5 Toralf Förster 2020-11-01 20:40:33 UTC]

Created attachment 669635 [details]
sci-biology:gmap-2020.10.27:20201101-203042.log