Bug 750320 – dev-python/scipy-1.8.1 fails to compile: source.c:(.text.startup+0x8c): undefined reference to `cblas_ddot'

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Agostino Sarubbo 2020-10-20 06:09:58 UTC]

https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: dev-python/scipy-1.5.3 fails to compile.
Discovered on: amd64 (internal ref: ci)

[Comment 1 Agostino Sarubbo 2020-10-20 06:10:01 UTC]

Created attachment 667280 [details]
build.log

build log and emerge --info

[Comment 2 Agostino Sarubbo 2020-10-20 06:10:03 UTC]

Possible context of error(s):

source.c:(.text.startup+0x8c): undefined reference to `cblas_ddot'
collect2: error: ld returned 1 exit status

[Comment 3 François Bissey 2020-10-20 06:18:24 UTC]

(In reply to Agostino Sarubbo from comment #2)
> Possible context of error(s):
> 
> source.c:(.text.startup+0x8c): undefined reference to `cblas_ddot'
> collect2: error: ld returned 1 exit status

That one should be OK, it is more of configuration style error, autoconf script logs a lot of stuff like that. cmake does produce some too.

Fails at:
/usr/lib64/python3.6/site-packages/numpy/distutils/system_info.py:817: UserWarning: Specified path /usr/lib64/python3.6/site-packages/numpy/__init__.py/include/python3.6m is invalid.

which makes me curious about your numpy install. Posting /usr/lib64/python3.6/site-packages/numpy/distutils/system_info.py could prove interesting.

[Comment 4 Agostino Sarubbo 2021-03-31 13:56:13 UTC]

Still reproducible on 1.6.2

[Comment 5 Agostino Sarubbo 2021-03-31 13:56:35 UTC]

Created attachment 696519 [details]
system_info.py

/usr/lib/python3.9/site-packages/numpy/distutils/system_info.py

[Comment 6 Agostino Sarubbo 2021-11-25 06:51:26 UTC]

ci has reproduced this issue with version 1.7.3 - Updating summary.

[Comment 7 Agostino Sarubbo 2022-02-06 18:14:54 UTC]

ci has reproduced this issue with version 1.8.0 - Updating summary.

[Comment 8 Agostino Sarubbo 2022-07-08 15:19:03 UTC]

lto_tinderbox has reproduced this issue with version 1.8.1 - Updating summary.