Bug 713992 – sci-chemistry/gromacs fails to compile on x86

• Status: RESOLVED INVALID
• Product: Gentoo Linux

[Description Agostino Sarubbo 2020-03-22 14:22:29 UTC]

This is an auto-filled bug because sci-chemistry/gromacs fails to compile on x86. Feel free to adjust the summary to clarify the exact issue. Attached build log and emerge --info

[Comment 1 Agostino Sarubbo 2020-03-22 14:22:36 UTC]

Created attachment 624472 [details]
build.log.bz2

build log and emerge --info

[Comment 2 Christoph Junghans (RETIRED) 2020-03-22 17:06:11 UTC]

Just a sandbox error:
 * --------------------------- ACCESS VIOLATION SUMMARY ---------------------------
 * LOG FILE: "/var/tmp/portage/sci-chemistry/gromacs-2019.5-r1/temp/sandbox.log"
 * 
VERSION 1.0
FORMAT: F - Function called
FORMAT: S - Access Status
FORMAT: P - Path as passed to function
FORMAT: A - Absolute Path (not canonical)
FORMAT: R - Canonical Path
FORMAT: C - Command Line

F: mkdir
S: deny
P: ././var/cache/fonts/pk
A: /var/cache/fonts/pk
R: /var/cache/fonts/pk
C: mkdir ././var/cache/fonts/pk 

F: mkdir
S: deny
P: ././var/cache/fonts/pk
A: /var/cache/fonts/pk
R: /var/cache/fonts/pk
C: mkdir ././var/cache/fonts/pk 
 * --------------------------------------------------------------------------------

[Comment 3 Alexey Shvetsov 2020-07-10 10:33:11 UTC]

Not related to gromacs. Seems like issue with build envirement

[Comment 4 Agostino Sarubbo 2020-07-10 10:55:47 UTC]

(In reply to Alexey Shvetsov from comment #3)
> Not related to gromacs. Seems like issue with build envirement

This is a build environment for arch testing, so if you think it is an issue related to my environment, then this is a problem.

I guess a sandbox violation is about how the build system behaves instead of something else.

[Comment 5 Alexey Shvetsov 2020-11-11 20:40:02 UTC]

I still think that is issue with latex build env (font cache for latex wasnt regenerated)