710250 – sci-biology/bcftools: invalid use of python-r1

Bug 710250 - sci-biology/bcftools: invalid use of python-r1

Summary: sci-biology/bcftools: invalid use of python-r1

Status:	RESOLVED INVALID

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	Normal normal (vote)
Assignee:	Gentoo Science Biology related packages

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Reported:	2020-02-19 20:50 UTC by Michał Górny
Modified:	2020-02-20 09:53 UTC (History)
CC List:	1 user (show)

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Runtime testing required:	---

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Description Michał Górny archtester

2020-02-19 20:50:49 UTC

The ebuild inherits python-r1 but doesn't use any of its functions.

Comment 1 Martin Mokrejš 2020-02-19 21:04:56 UTC

Hi Michal,
  is this possibly fixed by https://github.com/gentoo/gentoo/pull/14421 ? Just guessing ... I know I my pull request was not ideal, and indeed @soap fixed the puthon deps ... did still something escape? I am sorry then!
Martin

Comment 2 Michał Górny archtester

2020-02-20 05:56:34 UTC

Yeah, sorry, 1.9* is ok.

Comment 3 Martin Mokrejš 2020-02-20 09:53:15 UTC

Probably the -1.5 series works under py3 as well. Anyway, those are scripts which few people use, the main utility is compiled from C/C++. The `--disable-bcftools-plugins` argument enforced worries me much more than the py2/3 compatibility but I don't have time to study why are the handy features disabled altogether.