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Bug 705912 - dev-tex/pdfannotextractor-0.1l-r1 fails with many JAVAC errors
Summary: dev-tex/pdfannotextractor-0.1l-r1 fails with many JAVAC errors
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: TeX project
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-01-20 04:17 UTC by Bob Johnson
Modified: 2020-02-08 16:32 UTC (History)
8 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
Build Log (dev-tex:pdfannotextractor-0.1l-r1:20200120-040256.log,36.55 KB, text/x-log)
2020-01-20 04:17 UTC, Bob Johnson
Details

Note You need to log in before you can comment on or make changes to this bug.
Description Bob Johnson 2020-01-20 04:17:26 UTC
Created attachment 603786 [details]
Build Log

A recent upgrade of nodejs seemed to force a rebuild of dev-tex/pdfannotextractor, which fails after 100 JAVAC errors (probably an error limit). The other weird thing about this package is that the second character of the version string is the lowercase letter 'l', not a numeric '1'.
...
    [javac] /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/src/PDFAnnotExtractor.java:555: error: cannot find symbol
    [javac]             String name = ((PDNamedDestination)dest).getNamedDestination();
    [javac]                             ^
    [javac]   symbol:   class PDNamedDestination
    [javac]   location: class PDFAnnotExtractor
    [javac] /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/src/PDFAnnotExtractor.java:557: error: cannot find symbol
    [javac]             if (obj instanceof PDDestination) {
    [javac]                                ^
    [javac]   symbol:   class PDDestination
    [javac]   location: class PDFAnnotExtractor
    [javac] /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/src/PDFAnnotExtractor.java:558: error: cannot find symbol
    [javac]                 dest = (PDDestination)obj;
    [javac]                         ^
    [javac]   symbol:   class PDDestination
    [javac]   location: class PDFAnnotExtractor
    [javac] Note: /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/src/Entry.java uses unchecked or unsafe operations.
    [javac] Note: Recompile with -Xlint:unchecked for details.
    [javac] 100 errors

BUILD FAILED
/var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/build.xml:18: Compile failed; see the compiler error output for details.

Total time: 0 seconds
 * ERROR: dev-tex/pdfannotextractor-0.1l-r1::gentoo failed (compile phase):
 *   eant failed
 * 
 * Call stack:
 *     ebuild.sh, line  125:  Called src_compile
 *   environment, line 3118:  Called eant
 *   environment, line  551:  Called die
 * The specific snippet of code:
 *       ant ${antflags} "${@}" || die "eant failed"
# emerge --info =dev-tex/pdfannotextractor-0.1l-r1::gentoo 
Portage 2.3.79 (python 2.7.17-final-0, default/linux/amd64/17.1/desktop/plasma, gcc-9.2.0, glibc-2.29-r7, 4.19.86-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.19.86-gentoo-x86_64-Intel-R-_Core-TM-_i5-3570_CPU_@_3.40GHz-with-gentoo-2.6
KiB Mem:    32928784 total,  16142904 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sun, 19 Jan 2020 17:15:01 +0000
Head commit of repository gentoo: 2820b5abd86c5ff89132ab25e23a1f221be7ecc5
Head commit of repository sharctoo: 0785c605d74f4cd66beae49ab97282dd205e9851

sh bash 4.4_p23-r1
ld GNU ld (Gentoo 2.32 p2) 2.32.0
app-shells/bash:          4.4_p23-r1::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.17::gentoo, 3.6.9::gentoo, 3.7.5-r1::gentoo
dev-util/cmake:           3.14.6::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.13::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.11.6-r3::gentoo, 1.16.1-r1::gentoo
sys-devel/binutils:       2.32-r1::gentoo
sys-devel/gcc:            9.2.0-r2::gentoo
sys-devel/gcc-config:     2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 4.20::gentoo (virtual/os-headers)
sys-libs/glibc:           2.29-r7::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.namerica.gentoo.org/gentoo-portage/
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 24

local
    location: /usr/local/portage
    masters: gentoo

sharctoo
    location: /usr/local/overlays/sharctoo
    sync-type: git
    sync-uri: https://git.sharcnet.ca/preney/sharctoo.git
    masters: gentoo

stefantalpalaru
    location: /var/lib/layman/stefantalpalaru
    sync-type: laymansync
    sync-uri: https://github.com/stefantalpalaru/gentoo-overlay.git
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="@FREE vmware"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=native -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.3/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/vmware-installer"
CXXFLAGS="-march=native -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-march=native -O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-march=native -O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_US.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="en en_US"
MAKEOPTS="-j5"
PKGDIR="/var/cache/binpkgs"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac acl acpi activities alsa amd64 apache2 berkdb bluetooth branding bzip2 cairo cdda cdr cli colord consolekit crypt cups curl cxx dbus declarative doc dri dts dvd dvdr emboss encode examples exif flac fontconfig fortran gcj gd gdbm gif gtk gtk-doc handbook iconv icu ipv6 jack java jbig jpeg kde kipi kpathsea kwallet lcms ldap libnotify libtirpc lzma mad mbox mng mp3 mp4 mpeg multilib ncurses nls nptl odbc ogg openexr opengl openmp pam pango pcre pdf phonon plasma png policykit postgres ppds qml qt5 readline sdl seccomp semantic-desktop source spell split-usr ssl startup-notification svg t1lib tcpd threads tiff truetype udev udisks unicode upower usb vim-syntax vorbis webp widgets wxwidgets x264 xattr xcb xcomposite xinerama xml xpm xv xvid zlib" ABI_X86="64 32" ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_core authn_dbd authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers http2 ident imagemap include info lbmethod_byrequests log_config log_forensic logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc" INPUT_DEVICES="keyboard mouse evdev vmmouse wacom joystick" KERNEL="linux" L10N="en en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver presenter-minimizer wiki-publisher" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-3" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25" SANE_BACKENDS="epson2" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel radeonsi vesa vmware" XFCE_PLUGINS="clock trash" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

dev-tex/pdfannotextractor-0.1l-r1::gentoo was built with the following:
USE="" ABI_X86="(64)"
Comment 1 Tamas Jantvik 2020-01-20 18:11:11 UTC
I've hit this same problem.
Comment 2 Greg Turner 2020-01-21 19:51:45 UTC
from $DOCDIR/README:

<QUOTE>
E. REQUIREMENTS ===============
...
* PDFBox 0.7.2 or 0.7.3.

However, PDFAnnotExtractor does not work with the recent versions of PDFBox, currently only the older versions 0.7.2 or 0.7.3 are supported. The older versions are available at SourceForge: http://sourceforge.net/project/showfiles.php?group_id=78314
</QUOTE>

So reasonable near-term options basically are: DEPEND-block pdfbox, back-port pdfannotextractor, beg/plead for upstream pdfannotextractor back-port, vendor pdfbox, SLOT pdfbox, attempt to excise pdfannotextractor from the pdftex dependency tree, or various combinations of the above.
Comment 3 Greg Turner 2020-01-21 20:00:50 UTC
(In reply to Greg Turner from comment #2)
> back-port pdfannotextractor, beg/plead for upstream pdfannotextractor
> back-port, vendor pdfbox, SLOT pdfbox, attempt to excise pdfannotextractor

J/K!

It's not back-porting, just porting.  Totally deliberate; was just checking to see if you're paying attention! :)
Comment 4 Maurizio Contu 2020-01-27 11:11:03 UTC
(In reply to Bob Johnson from comment #0)
> Created attachment 603786 [details]
> Build Log
> 
> A recent upgrade of nodejs seemed to force a rebuild of
> dev-tex/pdfannotextractor, which fails after 100 JAVAC errors (probably an
> error limit). The other weird thing about this package is that the second
> character of the version string is the lowercase letter 'l', not a numeric
> '1'.
> ...
>     [javac]
> /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/src/
> PDFAnnotExtractor.java:555: error: cannot find symbol
>     [javac]             String name =
> ((PDNamedDestination)dest).getNamedDestination();
>     [javac]                             ^
>     [javac]   symbol:   class PDNamedDestination
>     [javac]   location: class PDFAnnotExtractor
>     [javac]
> /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/src/
> PDFAnnotExtractor.java:557: error: cannot find symbol
>     [javac]             if (obj instanceof PDDestination) {
>     [javac]                                ^
>     [javac]   symbol:   class PDDestination
>     [javac]   location: class PDFAnnotExtractor
>     [javac]
> /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/src/
> PDFAnnotExtractor.java:558: error: cannot find symbol
>     [javac]                 dest = (PDDestination)obj;
>     [javac]                         ^
>     [javac]   symbol:   class PDDestination
>     [javac]   location: class PDFAnnotExtractor
>     [javac] Note:
> /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/src/
> Entry.java uses unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>     [javac] 100 errors
> 
> BUILD FAILED
> /var/tmp/portage/dev-tex/pdfannotextractor-0.1l-r1/work/source/latex/pax/
> build.xml:18: Compile failed; see the compiler error output for details.
> 
> Total time: 0 seconds
>  * ERROR: dev-tex/pdfannotextractor-0.1l-r1::gentoo failed (compile phase):
>  *   eant failed
>  * 
>  * Call stack:
>  *     ebuild.sh, line  125:  Called src_compile
>  *   environment, line 3118:  Called eant
>  *   environment, line  551:  Called die
>  * The specific snippet of code:
>  *       ant ${antflags} "${@}" || die "eant failed"
> # emerge --info =dev-tex/pdfannotextractor-0.1l-r1::gentoo 
> Portage 2.3.79 (python 2.7.17-final-0,
> default/linux/amd64/17.1/desktop/plasma, gcc-9.2.0, glibc-2.29-r7,
> 4.19.86-gentoo x86_64)
> =================================================================
>                          System Settings
> =================================================================
> System uname:
> Linux-4.19.86-gentoo-x86_64-Intel-R-_Core-TM-_i5-3570_CPU_@_3.40GHz-with-
> gentoo-2.6
> KiB Mem:    32928784 total,  16142904 free
> KiB Swap:          0 total,         0 free
> Timestamp of repository gentoo: Sun, 19 Jan 2020 17:15:01 +0000
> Head commit of repository gentoo: 2820b5abd86c5ff89132ab25e23a1f221be7ecc5
> Head commit of repository sharctoo: 0785c605d74f4cd66beae49ab97282dd205e9851
> 
> sh bash 4.4_p23-r1
> ld GNU ld (Gentoo 2.32 p2) 2.32.0
> app-shells/bash:          4.4_p23-r1::gentoo
> dev-java/java-config:     2.2.0-r4::gentoo
> dev-lang/perl:            5.30.1::gentoo
> dev-lang/python:          2.7.17::gentoo, 3.6.9::gentoo, 3.7.5-r1::gentoo
> dev-util/cmake:           3.14.6::gentoo
> dev-util/pkgconfig:       0.29.2::gentoo
> sys-apps/baselayout:      2.6-r1::gentoo
> sys-apps/openrc:          0.42.1::gentoo
> sys-apps/sandbox:         2.13::gentoo
> sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r4::gentoo
> sys-devel/automake:       1.11.6-r3::gentoo, 1.16.1-r1::gentoo
> sys-devel/binutils:       2.32-r1::gentoo
> sys-devel/gcc:            9.2.0-r2::gentoo
> sys-devel/gcc-config:     2.1::gentoo
> sys-devel/libtool:        2.4.6-r6::gentoo
> sys-devel/make:           4.2.1-r4::gentoo
> sys-kernel/linux-headers: 4.20::gentoo (virtual/os-headers)
> sys-libs/glibc:           2.29-r7::gentoo
> Repositories:
> 
> gentoo
>     location: /usr/portage
>     sync-type: rsync
>     sync-uri: rsync://rsync.namerica.gentoo.org/gentoo-portage/
>     priority: -1000
>     sync-rsync-verify-jobs: 1
>     sync-rsync-verify-metamanifest: yes
>     sync-rsync-extra-opts: 
>     sync-rsync-verify-max-age: 24
> 
> local
>     location: /usr/local/portage
>     masters: gentoo
> 
> sharctoo
>     location: /usr/local/overlays/sharctoo
>     sync-type: git
>     sync-uri: https://git.sharcnet.ca/preney/sharctoo.git
>     masters: gentoo
> 
> stefantalpalaru
>     location: /var/lib/layman/stefantalpalaru
>     sync-type: laymansync
>     sync-uri: https://github.com/stefantalpalaru/gentoo-overlay.git
>     masters: gentoo
>     priority: 50
> 
> ACCEPT_KEYWORDS="amd64"
> ACCEPT_LICENSE="@FREE vmware"
> CBUILD="x86_64-pc-linux-gnu"
> CFLAGS="-march=native -O2 -pipe"
> CHOST="x86_64-pc-linux-gnu"
> CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc
> /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt
> /usr/share/themes/oxygen-gtk/gtk-2.0"
> CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d
> /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release
> /etc/php/apache2-php7.3/ext-active/ /etc/php/cgi-php7.3/ext-active/
> /etc/php/cli-php7.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d
> /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d
> /etc/texmf/updmap.d /etc/texmf/web2c /etc/vmware-installer"
> CXXFLAGS="-march=native -O2 -pipe"
> DISTDIR="/usr/portage/distfiles"
> ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT
> PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME
> XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
> FCFLAGS="-march=native -O2 -pipe"
> FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs
> config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox
> merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox
> preserve-libs protect-owned sandbox sfperms strict unknown-features-warn
> unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
> FFLAGS="-march=native -O2 -pipe"
> GENTOO_MIRRORS="http://distfiles.gentoo.org"
> LANG="en_US.utf8"
> LDFLAGS="-Wl,-O1 -Wl,--as-needed"
> LINGUAS="en en_US"
> MAKEOPTS="-j5"
> PKGDIR="/var/cache/binpkgs"
> PORTAGE_CONFIGROOT="/"
> PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times
> --omit-dir-times --compress --force --whole-file --delete --stats
> --human-readable --timeout=180 --exclude=/distfiles --exclude=/local
> --exclude=/packages --exclude=/.git"
> PORTAGE_TMPDIR="/var/tmp"
> USE="X a52 aac acl acpi activities alsa amd64 apache2 berkdb bluetooth
> branding bzip2 cairo cdda cdr cli colord consolekit crypt cups curl cxx dbus
> declarative doc dri dts dvd dvdr emboss encode examples exif flac fontconfig
> fortran gcj gd gdbm gif gtk gtk-doc handbook iconv icu ipv6 jack java jbig
> jpeg kde kipi kpathsea kwallet lcms ldap libnotify libtirpc lzma mad mbox
> mng mp3 mp4 mpeg multilib ncurses nls nptl odbc ogg openexr opengl openmp
> pam pango pcre pdf phonon plasma png policykit postgres ppds qml qt5
> readline sdl seccomp semantic-desktop source spell split-usr ssl
> startup-notification svg t1lib tcpd threads tiff truetype udev udisks
> unicode upower usb vim-syntax vorbis webp widgets wxwidgets x264 xattr xcb
> xcomposite xinerama xml xpm xv xvid zlib" ABI_X86="64 32"
> ADA_TARGET="gnat_2018" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x
> ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel
> intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci"
> APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_core
> authn_dbd authn_dbm authn_default authn_file authz_core authz_dbm
> authz_default authz_groupfile authz_host authz_owner authz_user autoindex
> cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires
> ext_filter file_cache filter headers http2 ident imagemap include info
> lbmethod_byrequests log_config log_forensic logio mem_cache mime mime_magic
> negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite
> setenvif slotmem_shm socache_shmcb speling status unique_id unixd userdir
> usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="karbon
> sheets words" CAMERAS="canon" COLLECTD_PLUGINS="df interface irq load memory
> rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3
> sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate
> evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip
> navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq
> superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="pc"
> INPUT_DEVICES="keyboard mouse evdev vmmouse wacom joystick" KERNEL="linux"
> L10N="en en-US" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216
> lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="nlpsolver
> presenter-minimizer wiki-publisher" NETBEANS_MODULES="apisupport cnd groovy
> gsf harness ide identity j2ee java mobility nb php profiler soa visualweb
> webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice"
> PHP_TARGETS="php7-3" POSTGRES_TARGETS="postgres10 postgres11"
> PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6"
> RUBY_TARGETS="ruby24 ruby25" SANE_BACKENDS="epson2" USERLAND="GNU"
> VIDEO_CARDS="amdgpu fbdev intel radeonsi vesa vmware" XFCE_PLUGINS="clock
> trash" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset
> ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark
> ipmark dhcpmac delude chaos account"
> Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK,
> LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS,
> PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
> 
> =================================================================
>                         Package Settings
> =================================================================
> 
> dev-tex/pdfannotextractor-0.1l-r1::gentoo was built with the following:
> USE="" ABI_X86="(64)"
I've had the same problem, looking for the changelog i found this:
https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c2b8ac714bdf2d8087c5307f8824928179ca02da
I downloaded the three old patches:
https://gitweb.gentoo.org/repo/gentoo.git/plain/dev-tex/pdfannotextractor/files/PDFAnnotExtractor.java.patch?id=2d298a39997b3a989cb53324b6dd6c5c963609b5
https://gitweb.gentoo.org/repo/gentoo.git/plain/dev-tex/pdfannotextractor/files/StringVisitor.java.patch?id=2d298a39997b3a989cb53324b6dd6c5c963609b5
https://gitweb.gentoo.org/repo/gentoo.git/plain/dev-tex/pdfannotextractor/files/javajars.patch?id=2d298a39997b3a989cb53324b6dd6c5c963609b5
and put them in the user patches :
/etc/portage/patches/dev-tex/pdfannotextractor-0.1l-r1/

I don't know if this is correct, but it worked for me.

Pdfannotextractor's source code, without patches, appears to be looking for pdfbox in the wrong path.
Comment 5 Greg Turner 2020-01-27 19:14:18 UTC
OK, then maybe it is back-porting :)

Thanks, Maurizio, those worked, at least to get the package building... anyone actually know how to test whether it actually works?

Interesting how often Gentoo puts me in a situation like this, trying to fix some package even though I have no idea what the heck it does :)
Comment 6 giskard 2020-02-05 15:56:17 UTC
same issue, just build texlive with -pdfannotextractor
Comment 7 Mikle Kolyada (RETIRED) archtester Gentoo Infrastructure gentoo-dev Security 2020-02-08 16:32:04 UTC
Should be fine after sync with gentoo.git happened.