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Bug 704544 - dev-python/nbconvert-5.5.0 - src_compile(): Notebook error: PandocMissing in customizing.ipynb: Pandoc wasn't found.
Summary: dev-python/nbconvert-5.5.0 - src_compile(): Notebook error: PandocMissing in ...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-01-02 10:27 UTC by Benjamin Réveillé
Modified: 2022-03-24 09:04 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,33.53 KB, text/plain)
2020-01-02 10:27 UTC, Benjamin Réveillé
Details

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Description Benjamin Réveillé 2020-01-02 10:27:10 UTC
Created attachment 602290 [details]
build.log

reading sources... [ 45%] changelog
reading sources... [ 50%] config_options
reading sources... [ 55%] customizing

Notebook error:
PandocMissing in customizing.ipynb:
Pandoc wasn't found.
Please check that pandoc is installed:
http://pandoc.org/installing.html
make: *** [Makefile:56: html] Error 2

> emerge --info '=dev-python/nbconvert-5.5.0::gentoo'
Portage 2.3.84 (python 2.7.17-final-0, default/linux/amd64/17.1/desktop/plasma, gcc-9.2.0, glibc-2.30-r3, 5.4.7-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-5.4.7-gentoo-x86_64-AMD_Ryzen_7_3700X_8-Core_Processor-with-gentoo-2.6
KiB Mem:    32897704 total,  18497328 free
KiB Swap:   73994232 total,  73994232 free
Head commit of repository gentoo: b5dba65b9334dfb0306973e0c723a10c50e2243f
sh bash 5.0_p11
ld GNU ld (Gentoo 2.33.1 p1) 2.33.1
ccache version 3.7.6 [enabled]
app-shells/bash:          5.0_p11::gentoo
dev-java/java-config:     2.2.0-r4::gentoo
dev-lang/perl:            5.30.1::gentoo
dev-lang/python:          2.7.17-r1::gentoo, 3.6.10::gentoo, 3.7.6::gentoo, 3.8.1::gentoo
dev-util/ccache:          3.7.6::gentoo
dev-util/cmake:           3.16.2-r1::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.6-r1::gentoo
sys-apps/openrc:          0.42.1::gentoo
sys-apps/sandbox:         2.18::gentoo
sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
sys-devel/automake:       1.13.4-r2::gentoo, 1.16.1-r2::gentoo
sys-devel/binutils:       2.33.1::gentoo
sys-devel/gcc:            9.2.0-r3::gentoo
sys-devel/gcc-config:     2.1::gentoo
sys-devel/libtool:        2.4.6-r6::gentoo
sys-devel/make:           4.2.1-r4::gentoo
sys-kernel/linux-headers: 5.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.30-r3::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.europe.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-jobs: 1
    sync-rsync-verify-metamanifest: yes
    sync-rsync-extra-opts: 
    sync-rsync-verify-max-age: 24

dwardo
    location: /usr/local/portage
    masters: gentoo
    priority: 0

Installed sets: @system
ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="@FREE vmware oracle-java-documentation-11 linux-fw-redistributable no-source-code grass-ipafonts NVIDIA-r2 oracle-java-documentation-8 smartgit free-noncomm dlj-1.1 skype-eula googleearth AdobeFlash-10 AdobeFlash-10.1 AdobeFlash-10.3 AdobeFlash-11.x Oracle-BCLA-JavaSE Intel-SDP skype-4.0.0.7-copyright google-chrome RAR unRAR Skype-TOS BitstreamCyberbit Snes9x PUEL"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -march=znver2 -fomit-frame-pointer -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/themes/oxygen-gtk/gtk-2.0"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.4/ext-active/ /etc/php/cgi-php7.4/ext-active/ /etc/php/cli-php7.4/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -march=znver2 -fomit-frame-pointer -pipe"
DISTDIR="/usr/portage/distfiles"
EMERGE_DEFAULT_OPTS="--quiet-build=n --keep-going --autounmask=n --verbose-conflicts --with-bdeps=y"
ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs ccache clean-logs compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync metadata-transfer multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://gentoo.modulix.net/gentoo/ http://mirrors.soeasyto.com/distfiles.gentoo.org/ ftp://ftp.free.fr/mirrors/ftp.gentoo.org/ ftp://mirrors.soeasyto.com/distfiles.gentoo.org/"
LANG="fr_FR.UTF-8"
LC_ALL="fr_FR.UTF-8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
LINGUAS="fr fr_FR en en_US en_GB"
MAKEOPTS="-j17"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="X a52 aac aacplus accessibility acl acpi activities aim alsa amd64 amr apache2 apng ass audiofile avahi bash-completion bcmath berkdb bidi bluetooth bzip2 cairo calendar captury ccache cdaudio cdda cddb cdinstall cdio cdr cgi chroot cli consolekit cpudetection crypt css cups cvs cxx dbus declarative device-mapper dga dhcp dirac discover divx dnd doc dri dts dv dvb dvd dvdr dvdread embedded emboss emoticon enca encode evdev exif extras faac faad fam fame fat fbcon fbcondecor ffmpeg fftw firefox firefox3 flac font-server fontconfig fortran fortran2003 fpx fr freetype fts3 fuse g3dvl gcj gcl gd gdbm gif gimp git gl2ps glib glibc-omitfp glitz gmail gmedia gmp gnutls goom gphoto2 gpm graphviz grub gs gsl gstreamer gtk gtk3 h323 highlight history hpcups htmlhandbook httpd iconv icq icu ieee1394 imagemagick imap imlib ithreads jabber jadetex java javafx jemalloc jpeg jpeg2k kde kerberos kipi kwallet lapack lastfm lcms libnotify libtirpc libv4l libv4l2 libwww lirc live lm-sensors logitech-mouse logrotate lua lzo mad math matroska mdnsresponder-compat messages mikmod mime minizip mjpeg mng mod modplug motif mp3 mp3tunes mp4 mpeg mpeg2 mpi mplayer msn mtp multilib musepack musicbrainz mysql ncurses network networkmanager nforce2 nfs nfsv4 nfsv41 nis nls nptl nsplugin ntfs nvcontrol nvidia nvtv objc ogg openal opencascade opengl openmp openssl pam pango parport parse-clocks pcre pdf pdfimport perl phonon pic plasma png policykit posix ppds projectm pulseaudio pvr python qml qrcode qt5 quicktime rar rdesktop readline real realmedia remote romio rtc rtmp rtsp samba sasl scanner schroedinger screen script sdl seccomp secure-delete semantic-desktop sensors server skins slang smbclient speex spell split-usr sql sqlite srt ssl staging startup-notification stream subtitles subversion svg swat sysfs szip tcl tcpd tetex texteffect theora threads threadsafe thunderbird tidy tiff tk transcode truetype udev udisks unicode update_drivedb upnp upower usb utils v4l v4l2 vaapi vdpau vdr videos vim vim-pager vim-syntax visualization vlm vorbis vpx wayland webkit webpresence webserver widgets win32codecs winpopup wmf wmp wxwidgets wxwindows x264 x265 xanim xattr xcb xcomposite xface xinerama xml xmlreader xmltv xosd xpm xscreensaver xulrunner xv xvfb xvid xvmc yahoo yv12 zeroconf zip zlib" ABI_X86="64 32" ADA_TARGET="gnat_2018" ALSA_CARDS="hda-intel" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_core authn_dbd authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests lbmethod_bytraffic lbmethod_bybusyness lbmethod_heartbeat log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="event" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sha sse sse2 sse3 sse4_1 sse4_2 sse4a ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse joystick evdev" KERNEL="linux" L10N="fr fr-FR en en-US en-GB" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LIRC_DEVICES="default devinput" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24 ruby25 ruby26" SANE_BACKENDS="hp hp3500 hp3900 hp4200 hp5400 hp5590 hpljm1005 hpsj5s" USERLAND="GNU" VIDEO_CARDS="nv v4l nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

dev-python/nbconvert-5.5.0::gentoo was built with the following:
USE="doc -test" ABI_X86="(64)" PYTHON_TARGETS="python3_6 -python3_5 -python3_7"
CFLAGS="-O2 -march=native -fomit-frame-pointer -pipe"
CXXFLAGS="-O2 -march=native -fomit-frame-pointer -pipe"
FEATURES="fixlafiles userfetch unmerge-logs assume-digests xattr distlocks unmerge-orphans usersync binpkg-logs ebuild-locks strict clean-logs usersandbox binpkg-docompress pid-sandbox binpkg-dostrip merge-sync metadata-transfer ipc-sandbox protect-owned news unknown-features-warn parallel-fetch sfperms preserve-libs splitdebug network-sandbox sandbox multilib-strict userpriv config-protect-if-modified"

> emerge -pqv '=dev-python/nbconvert-5.5.0::gentoo'
[ebuild   R   ] dev-python/nbconvert-5.5.0  USE="doc -test" PYTHON_TARGETS="python3_6 -python3_7 (-python3_5%)"
Comment 1 Benjamin Réveillé 2020-01-02 10:36:15 UTC
I emerged pandoc (and its 87 dependencies) and after that nbconvert isntalled fine

--> So its just that the pandoc dependency of nbconvert is missing (when USE=doc I guess)