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Bug 695194 - sci-chemistry/gromacs-2019.3 : sandbox issue
Summary: sci-chemistry/gromacs-2019.3 : sandbox issue
Status: RESOLVED INVALID
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-09-20 14:40 UTC by Toralf Förster
Modified: 2019-10-28 19:30 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,17.58 KB, text/plain)
2019-09-20 14:40 UTC, Toralf Förster
Details
CMakeCache.txt (CMakeCache.txt,70.79 KB, text/plain)
2019-09-20 14:40 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,229.44 KB, text/plain)
2019-09-20 14:40 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,12.30 KB, application/x-bzip)
2019-09-20 14:40 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,34.06 KB, application/x-bzip)
2019-09-20 14:40 UTC, Toralf Förster
Details
sandbox-4.log (sandbox-4.log,1.50 KB, text/plain)
2019-09-20 14:40 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2019.3:20190920-015046.log.bz2 (sci-chemistry:gromacs-2019.3:20190920-015046.log.bz2,92.58 KB, application/x-bzip)
2019-09-20 14:40 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2019-09-20 14:40:41 UTC
VERSION 1.0
FORMAT: F - Function called
FORMAT: S - Access Status
FORMAT: P - Path as passed to function
FORMAT: A - Absolute Path (not canonical)
FORMAT: R - Canonical Path
FORMAT: C - Command Line

F: mkostemp
S: deny

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma_systemd-20190913-193327

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
  [3]   pypy3 (fallback)
  [4]   jython2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-1.37.0 *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.13.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

repository timestamp:

==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Fri, 20 Sep 2019 01:06:17 +0000

emerge -qpvO sci-chemistry/gromacs
[ebuild  N    ] sci-chemistry/gromacs-2019.3  USE="X doc fftw gmxapi hwloc lmfit offensive openmp single-precision threads tng -blas -cuda -double-precision -lapack -mkl -mpi -opencl -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -fma4" PYTHON_TARGETS="python2_7"
Comment 1 Toralf Förster gentoo-dev 2019-09-20 14:40:44 UTC
Created attachment 590418 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2019-09-20 14:40:46 UTC
Created attachment 590420 [details]
CMakeCache.txt
Comment 3 Toralf Förster gentoo-dev 2019-09-20 14:40:49 UTC
Created attachment 590422 [details]
emerge-history.txt
Comment 4 Toralf Förster gentoo-dev 2019-09-20 14:40:51 UTC
Created attachment 590424 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2019-09-20 14:40:54 UTC
Created attachment 590426 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2019-09-20 14:40:57 UTC
Created attachment 590428 [details]
sandbox-4.log
Comment 7 Toralf Förster gentoo-dev 2019-09-20 14:40:59 UTC
Created attachment 590430 [details]
sci-chemistry:gromacs-2019.3:20190920-015046.log.bz2
Comment 8 Alexey Shvetsov archtester gentoo-dev 2019-10-02 12:32:38 UTC
This bus seems like related to you're latex install. But not to gromacs. Latex seems wants to rebuild font cache and failed because of sandbox