Created attachment 588696 [details] build.log from build.log: ============================= In file included from /local/tmp/huber/prefix/usr/include/threads.h:28, from xoshiro128starstar.c:42, from random.c:63: /local/tmp/huber/prefix/usr/include/bits/types/struct_timespec.h: At top level: /local/tmp/huber/prefix/usr/include/bits/types/struct_timespec.h:9:8: error: redefinition of ‘struct timespec’ struct timespec ^~~~~~~~ In file included from /usr/include/sys/select.h:43, from /usr/include/sys/types.h:219, from /usr/include/stdlib.h:314, from random.c:34: /usr/include/time.h:120:8: note: originally defined here struct timespec ^~~~~~~~ make[1]: *** [Makefile:280: random.o] Error 1 make[1]: Leaving directory '/dev/shm/portage/net-dns/bind-tools-9.14.5/work/bind-9.14.5/lib/isc' ============================= See also all the warnings in the build.log The following commit https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0f1ba103dba4ce5a455f6dd34281c30948917e55 removed the essential "--with-openssl=${EPREFIX}/usr" configure option. If this is not sent, then a few hardcoded path are used, see m4/ax_check_openssl.m4 for details. This means that the openssl from the host system will be used (if it is installed). An extra "-I/usr/include" will be passed to the compiler, resulting in an unhealthy mixture. The fix is simple: just add myeconfargs+=( --with-openssl="${EPREFIX}"/usr ) back into the ebuild. $ emerge --info net-dns/bind-tools Portage 2.3.75 (python 3.7.4-final-0, default/linux/amd64/17.0/no-multilib/prefix/kernel-3.2+, gcc-8.3.0, glibc-2.29-r5, 4.4.180-102-default x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.4.180-102-default-x86_64-Intel-R-_Core-TM-_i5-6500_CPU_@_3.20GHz-with-SuSE-42.3-x86_64 KiB Mem: 8053048 total, 554060 free KiB Swap: 8384508 total, 3604716 free Timestamp of repository gentoo: Mon, 02 Sep 2019 12:30:01 +0000 Head commit of repository gentoo: fdb58e1242ae735a3a55baaaf9c17a7122b33c4b Timestamp of repository science: Wed, 28 Aug 2019 16:07:37 +0000 Head commit of repository science: f7bb5489940fd37c2d1d539f92e6d13414bca52e sh bash 5.0_p11 ld GNU ld (Gentoo 2.32 p2) 2.32.0 app-shells/bash: 5.0_p11::gentoo dev-lang/perl: 5.30.0::gentoo dev-lang/python: 2.7.16::gentoo, 3.6.9::gentoo, 3.7.4-r1::gentoo dev-util/cmake: 3.15.2::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/sandbox: 2.18::gentoo sys-devel/autoconf: 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.32-r1::gentoo sys-devel/gcc: 8.3.0::gentoo, 9.2.0::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r5::gentoo Repositories: gentoo location: /scratch/huber/usr_portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-metamanifest: no sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 localrepo location: /local/tmp/huber/prefix/usr/local/portage masters: gentoo science location: /local/tmp/huber/prefix/var/db/repos/science sync-type: git sync-uri: https://github.com/gentoo/sci masters: gentoo ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -O2 -pipe -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /local/tmp/huber/prefix/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /local/tmp/huber/prefix/etc/env.d /local/tmp/huber/prefix/etc/gentoo-release" CXXFLAGS="-O2 -pipe -O2 -pipe -march=native" DISTDIR="/local/tmp/huber/prefix/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sfperms strict strict-keepdir unknown-features-warn unmerge-logs unmerge-orphans unprivileged xattr" FFLAGS="-O2 -pipe -O2 -pipe -march=native" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.utf-8" LC_ALL="en_US.utf-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j3" PKGDIR="/local/tmp/huber/prefix/var/cache/binpkgs" PORTAGE_CONFIGROOT="/local/tmp/huber/prefix/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/dev/shm/" USE="acl amd64 berkdb bzip2 caps cli crypt curl cxx dri eselect-ldso fftw fortran gdbm hdf5 iconv ipv6 jpeg lapack latex libtirpc lz4 lzma metis ncurses nls nptl openmp pcre pdf png postscript prefix python readline seccomp split-usr sqlite ssl stunnel tcpd threads tiff tools unicode utils vim-syntax webp xattr xkb xml zlib zstd" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 f16c fma3 pclmul popcnt sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="BPF X86 WebAssembly" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6 python3_7" QEMU_USER_TARGETS="x86_64" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="intel" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= net-dns/bind-tools-9.14.5::localrepo was built with the following: USE="caps ipv6 (prefix) readline xml -doc -gssapi -idn -libedit -libressl" CFLAGS="-O2 -pipe -O2 -pipe -march=native -DDIG_SIGCHASE" LDFLAGS="-Wl,-O1 -Wl,--as-needed -L/local/tmp/huber/prefix/usr/lib64"
Created attachment 588698 [details, diff] ebuild patch proposed patch
it has nothing to do with prefix itself, but fixed.
