eselect blas list Available BLAS/CBLAS (lib) candidates: (none found) Available BLAS/CBLAS (lib64) candidates: [1] openblas * Build fails with >>> Configuring source in /var/tmp/portage/sci-libs/arpack-3.1.5/work/arpack-ng-3.1.5 ... Package blas was not found in the pkg-config search path. Perhaps you should add the directory containing `blas.pc' to the PKG_CONFIG_PATH environment variable Package 'blas', required by 'virtual:world', not found Package lapack was not found in the pkg-config search path. Perhaps you should add the directory containing `lapack.pc' to the PKG_CONFIG_PATH environment variable Package 'lapack', required by 'virtual:world', not found Problem seems to be more than that, as any attempt of installing anything requiring linalg packages pulls reference blas-cblas-lapack-reference, it loks like openblas is not recognized by many packages
Created attachment 582144 [details] config.log
This is a serious issue potentially affecting many of science related packages, please don't hesitate to look into that.
Output of the following please: eix openblas
(In reply to lumbrius from comment #2) > This is a serious issue potentially affecting many of science related > packages, please don't hesitate to look into that. Please kindly provide your 1. emerge -pv virtual/blas virtual-lapack 2. emerge --info 3. emerge -pv sci-libs/openblas
(In reply to François Bissey from comment #3) > Output of the following please: > eix openblas ~ $ eix openblas [I] sci-libs/openblas Available versions: (~)0.2.14-r1[1] (~)0.2.15-r1[1] (~)0.2.19-r1[1] (~)0.2.20[1] (~)0.3.5 **9999[1] {dynamic eselect-ldso int64 openmp pthread serial static-libs threads ABI_MIPS="n32 n64 o32" ABI_RISCV="lp64 lp64d" ABI_S390="32 64" ABI_X86="32 64 x32"} Installed versions: 0.3.5(15时52分35秒 2019年07月08日)(eselect-ldso openmp -dynamic -pthread -serial -static-libs) Homepage: http://xianyi.github.com/OpenBLAS/ Description: Optimized BLAS library based on GotoBLAS2 [1] "science" /var/lib/layman/science
(In reply to Benda Xu from comment #4) > (In reply to lumbrius from comment #2) > > This is a serious issue potentially affecting many of science related > > packages, please don't hesitate to look into that. > > Please kindly provide your > > 1. emerge -pv virtual/blas virtual-lapack > 2. emerge --info > 3. emerge -pv sci-libs/openblas ~ $ emerge -pv virtual/blas virtual/lapack These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild N ~] sci-libs/lapack-3.8.0::gentoo USE="eselect-ldso -doc -lapacke" 0 KiB [uninstall ] app-eselect/eselect-cblas-0.1::gentoo [blocks b ] app-eselect/eselect-cblas ("app-eselect/eselect-cblas" is blocking sci-libs/lapack-3.8.0) [ebuild R ~] virtual/blas-3.8::gentoo USE="eselect-ldso" 0 KiB [ebuild R ~] virtual/lapack-3.8::gentoo USE="eselect-ldso" 0 KiB Total: 3 packages (1 new, 2 reinstalls, 1 uninstall), Size of downloads: 0 KiB Conflict: 1 block The following keyword changes are necessary to proceed: (see "package.accept_keywords" in the portage(5) man page for more details) # required by virtual/lapack-3.8::gentoo # required by virtual/lapack (argument) =sci-libs/lapack-3.8.0 ~amd64 The following USE changes are necessary to proceed: (see "package.use" in the portage(5) man page for more details) # required by virtual/lapack-3.8::gentoo # required by virtual/lapack (argument) >=sci-libs/lapack-3.8.0 eselect-ldso
(In reply to Benda Xu from comment #4) > (In reply to lumbrius from comment #2) > > This is a serious issue potentially affecting many of science related > > packages, please don't hesitate to look into that. > > Please kindly provide your > > 1. emerge -pv virtual/blas virtual-lapack > 2. emerge --info > 3. emerge -pv sci-libs/openblas ~ $ emerge -pv openblas These are the packages that would be merged, in order: Calculating dependencies... done! [ebuild R ~] sci-libs/openblas-0.3.5::gentoo USE="eselect-ldso openmp -dynamic -pthread -serial -static-libs" 0 KiB Total: 1 package (1 reinstall), Size of downloads: 0 KiB
emerge --info: Portage 2.3.66 (python 3.6.5-final-0, default/linux/amd64/17.1/desktop, gcc-8.3.0, glibc-2.29-r2, 4.19.52-gentoo x86_64) ================================================================= System uname: Linux-4.19.52-gentoo-x86_64-Intel-R-_Core-TM-_i7-8750H_CPU_@_2.20GHz-with-gentoo-2.6 KiB Mem: 32809852 total, 31863588 free KiB Swap: 1048572 total, 1048572 free Timestamp of repository gentoo: Mon, 08 Jul 2019 06:30:01 +0000 Head commit of repository gentoo: aa2bc8d05805b3dcd9eb75b589cf261ae2c7577f sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.31.1 p7) 2.31.1 app-shells/bash: 4.4_p23-r1::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.26.2::gentoo dev-lang/python: 2.7.15::gentoo, 3.6.5::gentoo dev-util/cmake: 3.9.6::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.38.3-r1::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.16.1-r1::gentoo sys-devel/binutils: 2.31.1-r6::gentoo sys-devel/gcc: 8.2.0-r6::gentoo, 8.3.0-r1::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r3::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 4.14-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: localrepo location: /usr/local/portage masters: gentoo priority: 0 gentoo-zh location: /var/lib/layman/gentoo-zh masters: gentoo priority: 50 science location: /var/lib/layman/science masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -fno-stack-protector -fomit-frame-pointer -march=native" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -pipe -fno-stack-protector -fomit-frame-pointer -march=native" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe -fno-stack-protector -fomit-frame-pointer -march=native" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe -fno-stack-protector -fomit-frame-pointer -march=native" GENTOO_MIRRORS="https://mirrors.tuna.tsinghua.edu.cn/gentoo https://mirrors.163.com/gentoo/" LANG="zh_CN.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j7" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl acpi alsa amd64 berkdb bluetooth branding bzip2 cairo cdda cdr cli consolekit crypt cups cxx dbus dri dts dvd dvdr emboss encode exif fam flac fortran gdbm gif glamor gpm gtk iconv ipv6 jpeg lcms ldap libnotify libtirpc mad mng mp3 mp4 mpeg multilib ncurses nls nptl ogg opengl openmp pam pango pcre pdf png policykit ppds qt5 readline sdl seccomp spell ssl startup-notification svg tcpd tiff truetype udev udisks unicode upower usb vorbis wxwidgets x264 xattr xcb xml xv xvid zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext pclmul popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="synaptics keyboard mouse" KERNEL="linux" L10N="ru zh-CN" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="nvidia intel i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Thank you lumbrius. Please use virtual/blas and virtual/lapack 3.8. In the mean time, we should stabilize the new framework soon.
No issue there with openblas-0.3.6 and arpack-3.5.0
Should this bug be marked as resolved now? I got things to work on both laptops :-)
(In reply to lumbrius from comment #11) > Should this bug be marked as resolved now? I got things to work on both > laptops :-) Thank you! Let's close this bug.
