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Bug 689202 - sci-biology/plink-1.90_pre140514 : plink_calc.c:(.text+<snip>): undefined reference to cblas_dger
Summary: sci-biology/plink-1.90_pre140514 : plink_calc.c:(.text+<snip>): undefined ref...
Status: CONFIRMED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2019-07-03 17:42 UTC by Toralf Förster
Modified: 2019-07-03 17:42 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.24 KB, text/plain)
2019-07-03 17:42 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,91.10 KB, text/plain)
2019-07-03 17:42 UTC, Toralf Förster
Details
environment (environment,74.12 KB, text/plain)
2019-07-03 17:42 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,10.47 KB, application/x-bzip)
2019-07-03 17:42 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,526 bytes, application/x-bzip)
2019-07-03 17:42 UTC, Toralf Förster
Details
sci-biology:plink-1.90_pre140514:20190703-014455.log (sci-biology:plink-1.90_pre140514:20190703-014455.log,28.92 KB, text/plain)
2019-07-03 17:42 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2019-07-03 17:42:00 UTC
      |                                          ^~~~~~~~~~~
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: /var/tmp/portage/sci-biology/plink-1.90_pre140514/temp/ccxRreer.o: in function `reml_em_one_trait(double*, double*, double*, double*, double, unsigned int)':
plink_calc.c:(.text+0x8bd8): undefined reference to `cblas_dger'
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: plink_calc.c:(.text+0x8c64): undefined reference to `cblas_dsymv'
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: plink_calc.c:(.text+0x8c98): undefined reference to `cblas_dsymv'
/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/bin/ld: plink_calc.c:(.text+0x8cb6): undefined reference to `cblas_ddot'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1-desktop-plasma_20190630-032303

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.1.0 *

Available Python interpreters, in order of preference:
  [1]   python3.6
  [2]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems) *

java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.12.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm

emerge -qpvO sci-biology/plink
[ebuild  N    ] sci-biology/plink-1.90_pre140514
Comment 1 Toralf Förster gentoo-dev 2019-07-03 17:42:03 UTC
Created attachment 581858 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2019-07-03 17:42:06 UTC
Created attachment 581860 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2019-07-03 17:42:09 UTC
Created attachment 581862 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2019-07-03 17:42:12 UTC
Created attachment 581864 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2019-07-03 17:42:14 UTC
Created attachment 581866 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2019-07-03 17:42:17 UTC
Created attachment 581868 [details]
sci-biology:plink-1.90_pre140514:20190703-014455.log