I've gotten these dep-warnings for a while now. Checked my system and didn't find any strange keywords or use-flags so it might actually be a real dependency problem. WARNING: One or more updates/rebuilds have been skipped due to a dependency conflict: app-emulation/containerd:0 (app-emulation/containerd-1.2.6:0/0::gentoo, ebuild scheduled for merge) conflicts with ~app-emulation/containerd-1.2.5 required by (app-emulation/docker-18.09.6:0/0::gentoo, installed) ^ ^^^^^ app-emulation/runc:0 (app-emulation/runc-1.0.0_rc8:0/0::gentoo, ebuild scheduled for merge) conflicts with ~app-emulation/runc-1.0.0_rc6_p20190216[seccomp] required by (app-emulation/docker-18.09.6:0/0::gentoo, installed)
Portage 2.3.66 (python 3.6.5-final-0, default/linux/amd64/17.1/desktop, gcc-8.3.0, glibc-2.29-r2, 4.19.44-gentoo x86_64) ================================================================= System uname: Linux-4.19.44-gentoo-x86_64-Intel-R-_Core-TM-_i7-6700HQ_CPU_@_2.60GHz-with-gentoo-2.6 KiB Mem: 32860916 total, 21543772 free KiB Swap: 524284 total, 524284 free Timestamp of repository gentoo: Mon, 10 Jun 2019 08:00:01 +0000 Head commit of repository gentoo: ba8d56d7417a537047b1b142b2521b35503765d2 sh bash 4.4_p23-r1 ld GNU ld (Gentoo 2.31.1 p7) 2.31.1 ccache version 3.6 [disabled] app-shells/bash: 4.4_p23-r1::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.28.2-r1::gentoo dev-lang/python: 2.7.15::gentoo, 3.6.5::gentoo dev-util/ccache: 3.6::gentoo dev-util/cmake: 3.14.3::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.41.2::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.11.6-r3::gentoo, 1.13.4-r2::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.31.1-r6::gentoo sys-devel/gcc: 8.3.0-r1::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r3::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 4.14-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r2::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: no sync-rsync-extra-opts: das-labor location: /var/lib/layman/das-labor sync-type: laymansync sync-uri: https://github.com/das-labor/labor-overlay.git masters: gentoo priority: 50 mva location: /var/lib/layman/mva sync-type: laymansync sync-uri: https://github.com/msva/mva-overlay masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64" ACCEPT_LICENSE="* -@EULA" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=native -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.2/ext-active/ /etc/php/apache2-php7.3/ext-active/ /etc/php/cgi-php7.2/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cli-php7.2/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=native -O2 -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://ftp.halifax.rwth-aachen.de/gentoo/" LANG="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j8" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="256-color X a52 aac acl acpi alsa amd64 berkdb blink bluetooth branding bzip2 cairo cdda cdr cli consolekit crypt cuda cups curl cxx dbus dri dts dvd dvdr emacs emboss encode exif fading-colors fam ffmpeg fftw flac gdbm gif glamor gmp gnome-keyring gnome-online-accounts google gpm gtk gtk3 http2 iconv inotify iproute2 iso14755 jack jpeg kerberos lcms ldap libnotify libtirpc lzma mad mng mp3 mp4 mpeg multilib ncurses nls nping nptl nvidia ogg opencl opengl openmp openrc-force pam pango pcre pdf pixbuf png policykit postscript ppds q32 q8 rar raw readline samba sdl seccomp spell ssh ssl startup-notification svg tcpd tiff truetype udev udisks unicode unicode3 upower usb uvm vorbis webp wxwidgets x264 xattr xcb xft xml xv xvid xvmc zlib" ABI_X86="64 32" ALSA_CARDS="hda-intel usb-audio" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2 aes avx avx2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="libinput keyboard mouse synaptics" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-2" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="nvidia" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
It is sad to read that you have problems with the software. The situation seems to be a bit more complicate and requires some analysis. We can not help you efficiently via bug tracker. The bug tracker aims rather on specific problems in .ebuilds and less on individual systems. I have had very good experience on the gentoo IRC [1] with questions like this. Of course there are also forums and mailing lists [2,3]. I hope you understand, that I will close the bug here therefore and wish you good luck on one of the mentioned channels [4]. Please reopen the ticket in order to provide an indication for an specific error in an ebuild or any gentoo related product. [1] https://www.gentoo.org/get-involved/irc-channels/ [2] https://forums.gentoo.org/ [3] https://www.gentoo.org/get-involved/mailing-lists/all-lists.html [4] https://www.gentoo.org/support/