Created attachment 575434 [details] build.log 'MAKEOPTS=-j1 emerge -v1 proj' fails with: ... libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DPROJ_LIB=\"/usr/share/proj\" -DMUTEX_pthread -I../include -Wall -Wextra -Winit-self -Wunused-parameter -Wformat -Werror=format-security -Wno-format-nonliteral -Wlogical-op -Wshadow -Werror=vla -Wdate-time -Wnull-dereference -Wduplicated-cond -Wextra-semi -Wfloat-conversion -Wmissing-declarations -Wnon-virtual-dtor -Weffc++ -Woverloaded-virtual -Wdeprecated -fno-operator-names -Wzero-as-null-pointer-constant -DPROJ_COMPILATION -march=broadwell -O2 -pipe -fvisibility=hidden -c jniproj.cpp -fPIC -DPIC -o .libs/jniproj.o In file included from jniproj.cpp:52: org_proj4_PJ.h:2:10: fatal error: jni.h: No such file or directory #include <jni.h> ^~~~~~~ compilation terminated. make[2]: *** [Makefile:1762: jniproj.lo] Error 1 root@lynx:/usr/src(5)# emerge --info '=sci-libs/proj-6.0.0::gentoo' Portage 2.3.66 (python 3.6.8-final-0, default/linux/amd64/17.0/desktop, gcc-8.3.0, glibc-2.29-r2, 5.0.13-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-5.0.13-gentoo-x86_64-Intel-R-_Core-TM-_i7-6700HQ_CPU_@_2.60GHz-with-gentoo-2.6 KiB Mem: 15904160 total, 6664972 free KiB Swap: 50331644 total, 50327028 free Timestamp of repository gentoo: Mon, 06 May 2019 17:30:01 +0000 Head commit of repository gentoo: bd8f14c485c6aa520fc58e92361110c601c68537 sh bash 5.0_p7 ld GNU ld (Gentoo 2.32 p2) 2.32.0 distcc[22255] (dcc_trace_version) distcc 3.3.2 x86_64-pc-linux-gnu; built Mar 17 2019 13:59:48 [disabled] app-shells/bash: 5.0_p7::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.28.2-r1::gentoo dev-lang/python: 2.7.16-r100::sage-on-gentoo, 3.6.8::gentoo, 3.7.3::gentoo dev-util/cmake: 3.11.4-r1::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/sandbox: 2.17::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.11.6-r3::gentoo, 1.13.4-r2::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.32-r1::gentoo sys-devel/gcc: 8.3.0-r1::gentoo, 9.1.0::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.0-r1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r2::gentoo Repositories: gentoo location: /usr/portage_lynx sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-verify-max-age: 24 sync-rsync-extra-opts: sync-rsync-verify-metamanifest: yes haskell location: /var/lib/layman/haskell masters: gentoo priority: 0 local location: /usr/local/portage masters: gentoo priority: 1 g-cpan location: /var/lib/cpan masters: gentoo priority: 2 ago location: /var/lib/layman/ago masters: gentoo priority: 50 imaging location: /var/lib/layman/imaging masters: gentoo priority: 50 octave location: /var/lib/layman/octave masters: gentoo priority: 50 sage-on-gentoo location: /var/lib/layman/sage-on-gentoo masters: gentoo science priority: 50 science location: /var/lib/layman/science masters: gentoo priority: 50 tlp location: /var/lib/layman/tlp masters: gentoo priority: 50 torbrowser location: /var/lib/layman/torbrowser masters: gentoo priority: 50 x11 location: /var/lib/layman/x11 masters: gentoo priority: 50 Installed sets: @system ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA PUEL Intel-SDP dlj-1.1 skype-eula skype-4.0.0.7-copyright googleearth AdobeFlash-11.x cadsoft Oracle-BCLA-JavaSE MakeMKV-EULA NVIDIA-CUDA Nero-AAC-EULA GIMPS" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=broadwell -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/config /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.3/ext-active/ /etc/php/cgi-php7.3/ext-active/ /etc/php/cli-php7.3/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=broadwell -O2 -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs clean-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-march=broadwell -O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="de en fr ru" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="64bit R X Xaw3d a52 aac acl acpi admin afs alsa amd64 amr ao apache2 apng applet archive armadillo arpack asf aspell assistant atlas audacious audiofile aufs automap automount barcode bash-completion berkdb blas blast bluetooth bluray boost branding btrfs bzip2 cairo cdda cddb cdf cdio cdparanoia cdr cgi chm cilk clang cli cmake collada consolekit contrib crypt css cups curl cxx daap db dbi dbm dbus declarative designer devhelp device-mapper dga dia digitalradio djvu doc dot dri ds2490 ds9097 ds9097u dts dv dvb dvd dvdr dvi dynamicplugin eds egl elf emacs emboss emf encode epiphany evdev evo examples excel exif expat extensions extra extras faac faad fam ffmpeg fftw firefox fits flac fltk fontconfig foomaticdb fortran fortran95 fpm fpx ftp fuse gcj gd gdal gdbm gedit geoip geolocation geos gfortran gif gimp git glade glamor glib glpk gml gmp gnome gnome-keyring gnuplot gnutls gold gphoto2 gpm grammar graphics graphtft graphviz grass gsl gsm gstreamer gtk gtk3 gudev guile hdaps hddtemp hdf hdf5 hdri html http httpd hvm hwdb iconv icq icu id3tag ide imagemagick imap initramfs inotify introspection ipod ipv6 irda ithreads jadetex java jbig jit john jpeg jpeg2k kate kde kdepim kdrive kerberos keymap kpathsea kvm ladspa lame lapack latex lcms ldap lensfun libffi libgda libkms libnotify libsamplerate libtirpc live lm_sensors lua lzma lzo mad mail maildir mapnik math matroska media-library mercurial mikmod mng mod mono motif mozilla mp3 mp4 mpeg mpi mpi-threads mplayer mtp multilib multimedia musepack musicbrainz mysql mysqli nautilus ncurses neXt netcdf netpbm network networking nfs nls nntp nptl nsplugin ntfs ntp numpy obex objc ocaml ocr octave odbc ofa ogdi ogg opencv openexr opengl openmp openvg pam pango pcre pda pdf pdl2 perl plasma plotutils plugins png podcast policykit portaudio posix postgres postscript ppds ppp preview-latex proj projectm pstricks pulseaudio python q16 q32 qemu qhull qml qt5 quicktime raw readline reiserfs reports rle romio rpc rrdcgi rrdtool rtlsdr sage samba sasl schroedinger science sdk sdl seccomp secure-delete server session shout sip slang slp smart smbclient smp sms sndfile snmp soap sockets sound soup sox speex spell sql sqlite ssl startup-notification stlport subtitles subversion sudo suexec svg svm swig systemd szip t1lib tbb tcl tcpd tex tex4ht theora thesaurus thinkpad threads thunderbird tidy tiff tk tools truetype udev udisks unicode upower usb utempter v4l v4l2 vaapi vala valgrind vdpau video vim-syntax virt-network virtualbox visio vorbis vpx vtk wav wayland webdav webdav-serf webkit wifi wmf wxwidgets x264 x265 xa xattr xcb xen xetex xft xine xml xmlreader xmlrpc xpm xps xv xvid xvmc yaml youtube zlib zsh-completion zvbi" ABI_X86="64" ALSA_CARDS="intel8x0" APACHE2_MODULES="actions alias auth_basic auth_digest authn_anon authn_dbd authn_core authn_dbm authn_default authn_file authz_core authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgid dav dav_fs dav_lock dbd deflate dir disk_cache env expires ext_filter file_cache filter headers ident imagemap include info lbmethod_byrequests log_config logio mem_cache mime mime_magic negotiation proxy proxy_ajp proxy_balancer proxy_connect proxy_http rewrite setenvif slotmem_shm so socache_shmcb speling status unique_id unixd userdir usertrack vhost_alias" APACHE2_MPMS="worker" CALLIGRA_FEATURES="karbon sheets words" CAMERAS="canon fuji ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog sensors thermal" CPU_FLAGS_X86="aes avx avx2 fma3 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="aivdm ashtech earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 navcom ntrip oceanserver oncore rtcm104v2 rtcm104v3 sirf superstar2 tnt tripmate tsip ublox nmea0183 nmea2000 passthrough" GRUB_PLATFORMS="emu efi-64 pc xen" INPUT_DEVICES="keyboard mouse evdev synaptics void" KERNEL="linux" L10N="de en fr ru" LCD_DEVICES="cfontz framebuffer glcd hd44780 mtxorb ncurses X lcd2usb lcdlinux png usblcd SureElec" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LIRC_DEVICES="devinput" LLVM_TARGETS="NVPTX X86" NETBEANS_MODULES="apisupport cnd dlight enterprise ergonomics groovy gsf harness ide identity j2ee java mobility nb php profiler websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-1" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" QEMU_SOFTMMU_TARGETS="arm i386 x86_64" QEMU_USER_TARGETS="arm i386 x86_64" RUBY_TARGETS="ruby24" USERLAND="GNU" VIDEO_CARDS="nouveau displaylink" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS root@lynx:/usr/src(6)# emerge -pqv '=sci-libs/proj-6.0.0::gentoo' [ebuild U ] sci-libs/proj-6.0.0 [4.9.2] USE="java -static-libs" !!! The following installed packages are masked:
Found the reason: In the ebuild, change the line append-cflags "$(java-pkg_get-jni-cflags)" to append-cxxflags "$(java-pkg_get-jni-cflags)"
(In reply to Bernd Feige from comment #1) > Found the reason: In the ebuild, change the line > append-cflags "$(java-pkg_get-jni-cflags)" > to > append-cxxflags "$(java-pkg_get-jni-cflags)" Works for me! Thanks!
Which JDK are you using? I thought this now needed JDK 9: https://github.com/OSGeo/proj.4/pull/969 !!! All ebuilds that could satisfy "=virtual/jdk-11" have been masked. !!! One of the following masked packages is required to complete your request: - virtual/jdk-11::gentoo (masked by: package.mask) /var/db/repos/gentoo/profiles/package.mask: # James Le Cuirot <chewi@gentoo.org> (17 Dec 2017) # Java 9+ is not yet fully supported on Gentoo. Packages cannot depend # on it so these virtuals are not yet required. If you wish to use # Java 9+ then install oracle-(jdk|jre)-bin or openjdk(-bin) directly. Also does it actually install any Java bindings? I did get it working for proj 5.0.1 but needed to add the use of java-ant-2 eclass.
(In reply to Chris Mayo from comment #3) > Which JDK are you using? dev-java/oracle-jdk-bin-1.8.0.202 here, virtual/jdk-1.8.0-r4. > I thought this now needed JDK 9: > https://github.com/OSGeo/proj.4/pull/969 Can't find the requirement in this request but it's written in proj-6.0.0/jniwrap/Readme.md. > !!! All ebuilds that could satisfy "=virtual/jdk-11" have been masked. > !!! One of the following masked packages is required to complete your > request: > - virtual/jdk-11::gentoo (masked by: package.mask) > ... > Also does it actually install any Java bindings? I did get it working for > proj 5.0.1 but needed to add the use of java-ant-2 eclass. No, only the main compilation with --with-jni is fixed by the suggested ebuild change but proj.jar is still not installed. Probably because the ant build is not started.
(In reply to Bernd Feige from comment #1) > Found the reason: In the ebuild, change the line > append-cflags "$(java-pkg_get-jni-cflags)" > to > append-cxxflags "$(java-pkg_get-jni-cflags)" Works for me as well.
(In reply to Juergen Rose from comment #5) > > Works for me as well. USE="-java" would be simpler and get the same files installed ;) N.B. the data files from DATUMGRID aren't being installed, they need unpacking in the data subdirectory. I've create a PR without Java and fixed data files plus some other fixes here: https://github.com/gentoo/gentoo/pull/11963
Created attachment 575978 [details] proj-6.0.0-r2.ebuild Attached is an ebuild which is my -r1 with added Java code taken from my previous 5.0.1 ebuild. repoman blocks this from being added to the repository because of JDK 11. Hence my -r1 PR. I haven't tested this with USE="java", it may well need the append-cflags "$(java-pkg_get-jni-cflags)" to append-cxxflags "$(java-pkg_get-jni-cflags)"
(In reply to Chris Mayo from comment #3) > Which JDK are you using? > > I thought this now needed JDK 9: > https://github.com/OSGeo/proj.4/pull/969 > > !!! All ebuilds that could satisfy "=virtual/jdk-11" have been masked. > !!! One of the following masked packages is required to complete your > request: > - virtual/jdk-11::gentoo (masked by: package.mask) > /var/db/repos/gentoo/profiles/package.mask: > # James Le Cuirot <chewi@gentoo.org> (17 Dec 2017) > # Java 9+ is not yet fully supported on Gentoo. Packages cannot depend > # on it so these virtuals are not yet required. If you wish to use > # Java 9+ then install oracle-(jdk|jre)-bin or openjdk(-bin) directly. > > > Also does it actually install any Java bindings? I did get it working for > proj 5.0.1 but needed to add the use of java-ant-2 eclass. root@lynx:/home/rose(110)# qlist -Iv jdk virtual/jdk-1.8.0-r4
And: dev-java/icedtea-bin-3.12.0
Same problem here. # emerge --info '=sci-libs/proj-6.0.0::gentoo' Portage 2.3.66 (python 2.7.16-final-0, default/linux/amd64/17.0, gcc-9.1.0, glibc-2.29-r2, 5.0.18-default-pciehp x86_64) ================================================================= System Settings ================================================================= System uname: Linux-5.0.18-default-pciehp-x86_64-Intel-R-_Core-TM-_i7-2640M_CPU_@_2.80GHz-with-gentoo-2.6 KiB Mem: 16363428 total, 5164368 free KiB Swap: 26853460 total, 26853460 free Timestamp of repository gentoo: Sat, 29 Jun 2019 08:30:02 +0000 Head commit of repository gentoo: 4e2f9f3967bb4df72362aabc9bc6ba06cb72e876 sh bash 5.0_p7 ld GNU ld (Gentoo 2.30 p5) 2.30.0 app-shells/bash: 5.0_p7::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.28.9999::gentoo dev-lang/python: 2.7.16-r101::stefantalpalaru, 3.5.6::gentoo, 3.6.8::gentoo, 3.7.3::gentoo dev-util/cmake: 3.14.0::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.41.2::gentoo sys-apps/sandbox: 2.17::gentoo sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.11.6-r2::gentoo, 1.12.6-r1::gentoo, 1.13.4-r2::gentoo, 1.14.1-r1::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.30-r4::gentoo, 2.31.1-r4::gentoo, 2.32-r1::gentoo sys-devel/gcc: 5.5.0::gentoo, 6.5.0::gentoo, 7.3.0-r6::gentoo, 8.3.0-r1::gentoo, 9.1.0::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 5.1::gentoo (virtual/os-headers) sys-libs/glibc: 2.29-r2::gentoo Repositories: gentoo location: /scratch/usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 science location: /scratch/mmokrejs/proj/sci masters: gentoo priority: 0 layman location: /var/lib/layman masters: gentoo priority: 1 x-portage location: /usr/local/portage masters: gentoo priority: 2 haskell location: /var/lib/layman/haskell masters: gentoo priority: 50 stefantalpalaru location: /var/lib/layman/stefantalpalaru masters: gentoo science priority: 50 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="@FREE dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 Nero-EULA-US AdobeFlash-10.3 AdobeFlash-11.x OPERA-2014 RAR Intel-SDP intel-ucode Skype-TOS vmware linux-firmware fasta vienna-rna unafold GRL MSttfEULA hplip-plugin meme mRNAmarkup ApE ICS ipw3945 finchtv modeller gmap master-pdf-editor abyss swiss-prot Aladdin AVASYS truecrypt-3.0 pyvcf Non-profit-OSL-3.0 estscan bcca_2010 oncotator Adobe blat staden CeCILL-1.1 phrap STRIDE cctbx-2.0 bh-luxi ARIADNE unRAR all-rights-reserved trf annovar_personal_only stampy-academic BSD-BroadInstitute UPennState freedist free-noncomm blasr sun-jlfgr FLI-Jena PSTT netperf sun-jsr67 xv vim.org OSGi-Specification-2.0 colt" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -pipe -mpclmul -mpopcnt -march=native -ftree-vectorize" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /etc/stunnel/stunnel.conf /usr/lib64/libreoffice/program/sofficerc /usr/share/easy-rsa /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.2/conf /usr/share/maven-bin-3.3/conf /usr/share/maven-bin-3.6/conf /var/bind /var/lib/hsqldb /var/spool/torque" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/apache2-php7.1/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c /etc/vmware-installer" CXXFLAGS="-O2 -pipe -mpclmul -mpopcnt -march=native -ftree-vectorize" DISTDIR="/scratch/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news nostrip parallel-fetch pid-sandbox preserve-libs protect-owned sandbox sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://gentoo.wheel.sk/ http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="en_US en_GB en cs" MAKEOPTS="-j2" PKGDIR="/var/cache/binpkgs" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/scratch/var/tmp" USE="R X acpi alsa amd64 amr apache apache2 asm avx bcache berkdb bluetooth boost bzip2 cairo cgi cli coin connection-sharing consolekit cracklib crypt cryptlib cryptsetup cups cxx dbus device-mapper dhcp directfb dri drm dvd emboss encode fax fbcon ffmpeg flac fontconfig fortran fuse gbm gcrypt gd gdbm geoip geolocation gimp glib glpk gmp gpm gps gtk hal hpijs hwdb iconv id3tag imaging innodb inotify iproute2 java javafx javascript jce jpeg jpg js jscript keymap kmod ladspa lame lapack laptop lcms libev libevent libnotify libtirpc lm_sensors mad matroska mmx modemmanager mp3 multicore multilib multimedia mysql ncurses netpbm networkmanager nfs nls nptl nptlonly nscd ntfs ntfsdecrypt ntfsprogs objc ocr ogg opengl openmp openssl opus pam parport pcre pcre16 pdf pdfimport pdl perl php pkcs11 plplot png policykit polkit postproc postscript ppds ppp pppd pptx python qt3support qt4 qt5 readline rendering resolvconf samba scanner sctp seccomp server session sha512 slideshow smartcard sna sndfile sparsehash sqlite sse sse2 sse3 sse4_1 sse4_2 ssh ssh-agent ssl sslv2 sslv3 ssse3 startup-notification suexec svg syslog tcl tcpd tevent threads tiff tk truetype twolame udev unicode upower usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xattr xcb xcomposite xft xinerama xml xorg xrandr xv xvid zlib" ABI_X86="64 32" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="alias authz_host auth_basic auth_digest cgi cgid deflate dir env filter include info mem_cache mime mime_magic negotiation remoteip setenvif status userdir vhost_alias rewrite usertrack cache file_cache disk_cache charset_lite log_config log_forensic" CALLIGRA_FEATURES="karbon sheets words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="aivdm ashtech earthmate evermore fv18 garmin garmintxt gpsclock greis isync itrax mtk3301 navcom ntrip oceanserver oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 tnt tripmate tsip ublox fury geostar nmea0183 nmea2000 passthrough" GRUB_PLATFORMS="pc" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en-US en en-GB cs" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" NETBEANS_MODULES="apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-5" POSTGRES_TARGETS="postgres10 postgres11" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6 python3_7" RUBY_TARGETS="ruby24 ruby25" USERLAND="GNU" VIDEO_CARDS="vesa vmware fbdev intel i915 i965" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS # qlist -Iv jdk dev-java/htsjdk-2.3.0 dev-java/oracle-jdk-bin-1.7.0.40 dev-java/oracle-jdk-bin-1.8.0.202 dev-java/oracle-jdk-bin-11.0.2 dev-java/oracle-jdk-bin-9.0.4-r2 java-virtuals/jdk-with-com-sun-20111111-r3 virtual/jdk-1.6.0-r2 virtual/jdk-1.7.0-r2 virtual/jdk-1.8.0-r4 # # eselect java-vm list Available Java Virtual Machines: [1] oracle-jdk-bin-1.7 [2] oracle-jdk-bin-1.8 system-vm [3] oracle-jre-bin-1.7 [4] oracle-jre-bin-1.8 # (In reply to Bernd Feige from comment #1) > Found the reason: In the ebuild, change the line > append-cflags "$(java-pkg_get-jni-cflags)" > to > append-cxxflags "$(java-pkg_get-jni-cflags)" Works for me too! Thanks!
I hit this on yet another host.
I would like to know the location of ebuild, I couldn't find this file? thanks!
JNI is hard-disabled for some time in ebuilds and now dropped in upstream >=7.0.0.
