Bug 675490 – sci-chemistry/gromacs-2018.3 - sandbox violation in mkostemp /usr/share/fonts/util/.uuid.TMP-XXXXXX

• Status: RESOLVED WORKSFORME
• Product: Gentoo Linux

[Description Vytautas 2019-01-15 13:36:14 UTC]

Failed to emerge sci-chemistry/gromacs-2018.3

[Comment 1 Vytautas 2019-01-15 13:38:28 UTC]

Created attachment 561196 [details]
emerge --info

[Comment 2 Vytautas 2019-01-15 13:40:27 UTC]

Build log is whooping 1.6 Mb

Message like this repeated a lot:
 F: mkostemp
S: deny
P: /usr/share/fonts/util/.uuid.TMP-XXXXXX
A: /usr/share/fonts/util/.uuid.TMP-XXXXXX
R: /usr/share/fonts/util/.uuid.TMP-XXXXXX
C: /usr/bin/gs -P- -dSAFER -dCompatibilityLevel=1.4 -dEPSCrop -q -P- -dNOPAUSE -dBATCH -sDEVICE=pdfwrite -sstdout=%stderr -sOutputFile=/var/tmp/portage/sci-chemistry/gromacs-2018.3/work/gromacs-2018.3_float/docs/manual/plots/pulldirrel.pdf -P-  * --------------------------------------------------------------------------------

[Comment 3 Ben Kohler 2019-01-15 13:52:11 UTC]

Try running "fc-cache -r" as root, then see if the gromacs emerge succeeds.

[Comment 4 Vytautas 2019-01-21 09:13:37 UTC]

I tried:
  fc-cache -r
  emerge gromacs
and it works.

[Comment 5 Alexey Shvetsov 2019-06-03 07:04:57 UTC]

This version is no longer in portage. Latest one is 2019.2 or 2018.7 in previos branch