Created attachment 555214 [details] dev-python/cython-0.29:20181115-141416.log.bz2 ====================================================================== ERROR: runTest (__main__.CythonRunTestCase) compiling (c) and running parallel ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib64/python3.4/site-packages/numpy/distutils/unixccompiler.py", line 58, in UnixCCompiler__compile extra_postargs, display = display) File "/usr/lib64/python3.4/site-packages/numpy/distutils/ccompiler.py", line 89, in <lambda> m = lambda self, *args, **kw: func(self, *args, **kw) File "/usr/lib64/python3.4/site-packages/numpy/distutils/ccompiler.py", line 152, in CCompiler_spawn raise DistutilsExecError('Command "%s" failed with exit status %d%s' % (cmd, s, msg)) distutils.errors.DistutilsExecError: Command "x86_64-pc-linux-gnu-gcc -march=corei7-avx -pipe -Og -g -gdwarf-4 -fno-strict-overflow -fPIC -I/var/tmp/portage/dev-python/cython-0.29/work/Cython-0.29/tests/run -I/usr/include/python3.4m -c parallel.c -o /var/tmp/portage/dev-python/cython-0.29/work/Cython-0.29-python3_4/tests/run/c/parallel/parallel.o -march=corei7-avx -pipe -Og -g -gdwarf-4 -fno-strict-overflow -DCYTHON_REFNANNY=1 -fopenmp" failed with exit status 1 During handling of the above exception, another exception occurred: Traceback (most recent call last): File "runtests.py", line 1262, in run ext_so_path = self.runCompileTest() File "runtests.py", line 945, in runCompileTest self.test_directory, self.expect_errors, self.expect_warnings, self.annotate) File "runtests.py", line 1196, in compile so_path = self.run_distutils(test_directory, module, workdir, incdir) File "runtests.py", line 1117, in run_distutils build_extension.run() File "/usr/lib64/python3.4/distutils/command/build_ext.py", line 339, in run self.build_extensions() File "/usr/lib64/python3.4/distutils/command/build_ext.py", line 448, in build_extensions self.build_extension(ext) File "runtests.py", line 543, in build_extension _build_ext.build_extension(self, ext) File "/usr/lib64/python3.4/distutils/command/build_ext.py", line 503, in build_extension depends=ext.depends) File "/usr/lib64/python3.4/site-packages/numpy/distutils/ccompiler.py", line 89, in <lambda> m = lambda self, *args, **kw: func(self, *args, **kw) File "/usr/lib64/python3.4/site-packages/numpy/distutils/ccompiler.py", line 343, in CCompiler_compile single_compile(o) File "/usr/lib64/python3.4/site-packages/numpy/distutils/ccompiler.py", line 303, in single_compile self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts) File "/usr/lib64/python3.4/site-packages/numpy/distutils/ccompiler.py", line 89, in <lambda> m = lambda self, *args, **kw: func(self, *args, **kw) File "/usr/lib64/python3.4/site-packages/numpy/distutils/unixccompiler.py", line 61, in UnixCCompiler__compile raise CompileError(msg) distutils.errors.CompileError: Command "x86_64-pc-linux-gnu-gcc -march=corei7-avx -pipe -Og -g -gdwarf-4 -fno-strict-overflow -fPIC -I/var/tmp/portage/dev-python/cython-0.29/work/Cython-0.29/tests/run -I/usr/include/python3.4m -c parallel.c -o /var/tmp/portage/dev-python/cython-0.29/work/Cython-0.29-python3_4/tests/run/c/parallel/parallel.o -march=corei7-avx -pipe -Og -g -gdwarf-4 -fno-strict-overflow -DCYTHON_REFNANNY=1 -fopenmp" failed with exit status 1 <...> ---------------------------------------------------------------------- Ran 11944 tests in 3554.258s FAILED (errors=4, skipped=106) Following tests excluded because of missing dependencies on your system: run.numpy_pythran Times: compile-c : 868.14 sec ( 980, 0.886 / run) - slowest: 'c:test_unicode' (48.82s), 'c:test_coroutines_pep492' (28.77s), 'c:test_grammar' (15.83s), 'c:test_asyncgen' (14.18s), 'c:memslice' (13.89s), 'c:numpy_test' (10.10s), 'c:fused_def' (9.93s), 'c:memoryview' (8.25s) compile-cpp : 1091.82 sec (1043, 1.047 / run) - slowest: 'cpp:test_unicode' (54.31s), 'cpp:test_coroutines_pep492' (32.23s), 'cpp:test_grammar' (17.66s), 'cpp:test_asyncgen' (15.86s), 'cpp:memslice' (15.18s), 'cpp:numpy_test' (11.35s), 'cpp:fused_def' (11.23s), 'cpp:memoryview' (9.38s) cython : 837.15 sec (2207, 0.379 / run) - slowest: 'cpp:test_unicode' (11.40s), 'c:test_unicode' (11.13s), 'cpp:numpy_test' (8.92s), 'c:numpy_test' (8.88s), 'c:memslice' (8.83s), 'cpp:memslice' (8.79s), 'c:test_coroutines_pep492' (8.79s), 'cpp:test_coroutines_pep492' (8.78s) etoe-build : 147.11 sec ( 68, 2.163 / run) - slowest: 'c:memoryview_compare_type_pointers(1)' (8.42s), 'c:memoryview_acq_count(1)' (7.62s), 'c:public_fused_types(1)' (5.77s), 'c:pure_pxd(1)' (5.26s), 'c:cdef_multiple_inheritance_errors(1)' (4.42s), 'c:asyncio_generators(1)' (4.12s), 'c:coverage_api(2)' (3.78s), 'c:fused_cmethods(1)' (3.77s) etoe-run : 23.72 sec ( 114, 0.208 / run) - slowest: 'c:pyximport_pyimport(1)' (3.63s), 'c:cpdef_pickle(1)' (2.09s), 'c:cythonize_script_package(1)' (2.01s), 'c:cythonize_script(1)' (1.68s), 'c:pyximport_errors(1)' (1.31s), 'c:cythonize_script_excludes(1)' (1.26s), 'c:pyximport_namespace(1)' (1.22s), 'c:pyximport_basic(1)' (1.21s) import : 1.42 sec (1387, 0.001 / run) - slowest: 'c:importas' (0.34s), 'cpp:test_coroutines_pep492' (0.01s), 'cpp:print_function' (0.01s), 'cpp:print' (0.01s), 'c:print_function' (0.01s), 'cpp:nogil' (0.01s), 'c:print' (0.01s), 'c:nogil' (0.01s) pyimport : 0.05 sec ( 48, 0.001 / run) - slowest: 'py:pure_py' (0.00s), 'py:withstat_py27' (0.00s), 'py:constant_folding' (0.00s), 'py:ext_auto_richcmp' (0.00s), 'py:generators_py' (0.00s), 'py:withstat_py' (0.00s), 'py:purecdef' (0.00s), 'py:for_in_iter' (0.00s) pyrun : 0.39 sec ( 48, 0.008 / run) - slowest: 'py:generators_py' (0.04s), 'py:pure_py' (0.03s), 'py:constant_folding' (0.03s), 'py:ext_auto_richcmp' (0.03s), 'py:uninitialized' (0.03s), 'py:withstat_py' (0.02s), 'py:pyclass_scope_T671' (0.01s), 'py:purecdef' (0.01s) run : 283.06 sec (1387, 0.204 / run) - slowest: 'c:test_fstring' (96.96s), 'c:test_coroutines_pep492' (91.75s), 'cpp:memslice' (25.17s), 'c:memslice' (24.52s), 'c:test_unicode' (4.78s), 'cpp:test_unicode' (4.71s), 'c:memoryview_in_subclasses' (4.01s), 'cpp:memoryview_in_subclasses' (3.92s) ALL DONE queue3.c: In function '__pyx_f_6queue3_5Queue_append': queue3.c:1422:60: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] __pyx_t_6 = ((!(queue_push_tail(__pyx_v_self->_c_queue, ((void *)__pyx_v_value)) != 0)) != 0); ^ queue3.cpp: In function 'PyObject* __pyx_f_6queue3_5Queue_append(__pyx_obj_6queue3_Queue*, int, int)': queue3.cpp:1436:68: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] __pyx_t_6 = ((!(queue_push_tail(__pyx_v_self->_c_queue, ((void *)__pyx_v_value)) != 0)) != 0); ^~~~~~~~~~~~~ In file included from /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/arrayobject.h:4, from convolve2.c:610: /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ In file included from /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816, from /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/arrayobject.h:4, from convolve2.cpp:624: /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ * ERROR: dev-python/cython-0.29::gentoo failed (test phase): * Tests fail with python3.4 * * Call stack: * ebuild.sh, line 124: Called src_test * environment, line 2947: Called distutils-r1_src_test * environment, line 996: Called _distutils-r1_run_foreach_impl 'python_test' * environment, line 447: Called python_foreach_impl 'distutils-r1_run_phase' 'python_test' * environment, line 2463: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 1813: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test' * environment, line 1811: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test' * environment, line 659: Called distutils-r1_run_phase 'python_test' * environment, line 927: Called python_test * environment, line 2849: Called die * The specific snippet of code: * "${PYTHON}" runtests.py -vv --work-dir "${BUILD_DIR}"/tests || die "Tests fail with ${EPYTHON}"
eroen@occam ~ $ emerge --info '=dev-python/cython-0.29::gentoo' Portage 2.3.51 (python 3.7.0-final-0, default/linux/amd64/17.0/hardened, gcc-8.2.0, glibc-2.27-r6, 4.19.1-gentoo-o0 x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.19.1-gentoo-o0-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.6 KiB Mem: 7998232 total, 3859408 free KiB Swap: 16777212 total, 15808764 free Timestamp of repository gentoo: Thu, 15 Nov 2018 11:30:01 +0000 Head commit of repository gentoo: 3a5b9598e49664cf3b11fb276adae40093c40d9e Timestamp of repository eroen: Sun, 30 Oct 2016 21:58:42 +0000 Head commit of repository sapher: 9ef31d0bf6a902342746fb03a445d4f8b7ddabef Head commit of repository wiktorb: 2436f2d433769b4a7c69a4088dbc5acd2645c38c Head commit of repository gentoo-snappy: 0ea79c799ebe1bc6cd924b9dd707b710eea24e83 Head commit of repository stuff: 91656fdf9e4e8f082d8c25eeaf62c85c87556053 sh bash 4.4_p23 ld GNU ld (Gentoo 2.31.1 p3) 2.31.1 ccache version 3.5 [disabled] app-shells/bash: 4.4_p23::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.26.2::gentoo dev-lang/python: 2.7.15::gentoo, 3.4.8-r1::gentoo, 3.5.5-r1::gentoo, 3.6.6::gentoo, 3.7.0::gentoo dev-util/ccache: 3.5-r1::gentoo dev-util/cmake: 3.12.2::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.39.2::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.11.6-r3::gentoo, 1.13.4-r2::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.31.1-r1::gentoo sys-devel/gcc: 6.4.0-r5::gentoo, 7.3.0-r6::gentoo, 8.2.0-r4::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 4.19::gentoo (virtual/os-headers) sys-libs/glibc: 2.27-r6::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-max-age: 24 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-jobs: 1 crossdev location: /var/lib/portage/crossdev masters: gentoo gamerlay eroen eroen location: /usr/local/portage masters: gentoo priority: 0 sapher location: /var/lib/overlays/sapher sync-type: git sync-uri: https://github.com/apinsard/sapher-overlay.git masters: gentoo wiktorb location: /var/lib/overlays/wiktorb sync-type: git sync-uri: https://github.com/wiktor-b/overlay.git masters: gentoo dotnet location: /var/lib/layman/dotnet masters: gentoo priority: 50 enlightenment location: /var/lib/layman/enlightenment masters: gentoo priority: 50 flora location: /var/lib/layman/flora masters: gentoo priority: 50 gamerlay location: /var/lib/layman/gamerlay masters: gentoo priority: 50 gentoo-snappy location: /usr/local/portage/gentoo-snappy sync-type: git sync-uri: https://github.com/zyga/gentoo-snappy.git masters: gentoo priority: 50 glc location: /var/lib/layman/glc masters: gentoo priority: 50 hardened-development location: /var/lib/layman/hardened-development masters: gentoo priority: 50 haskell location: /var/lib/layman/haskell masters: gentoo priority: 50 hasufell location: /var/lib/layman/hasufell masters: gentoo priority: 50 java location: /var/lib/layman/java masters: gentoo priority: 50 laurentb location: /var/lib/layman/laurentb masters: gentoo priority: 50 roslin location: /var/lib/layman/roslin masters: gentoo priority: 50 stuff location: /var/lib/layman/stuff sync-type: git sync-uri: https://github.com/istitov/stuff.git masters: gentoo priority: 50 sunrise location: /var/lib/layman/sunrise masters: gentoo priority: 50 toolchain location: /var/lib/layman/toolchain masters: gentoo priority: 50 v-fox location: /var/lib/layman/v-fox masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=corei7-avx -pipe -Og -g -gdwarf-4" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/config /usr/share/easy-rsa /usr/share/gnupg/qualified.txt" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=corei7-avx -pipe -Og -g -gdwarf-4" DISTDIR="/var/distfiles" EMERGE_DEFAULT_OPTS="--jobs=1 --autounmask --quiet-build --nospinner --verbose-conflicts --verbose-slot-rebuilds" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs binpkg-multi-instance cgroup collision-protect compressdebug config-protect-if-modified distlocks ebuild-locks fixlafiles installsources ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch parallel-install preserve-libs protect-owned sandbox sfperms split-log splitdebug strict strict-keepdir test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" INSTALL_MASK="/usr/share/locale -/usr/share/locale/en* -/usr/share/locale/nb* -/usr/share/locale/no*" LANG="en_GB.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu" MAKEOPTS="-j4 -l10" PKGDIR="/var/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac acl alsa amd64 apng audio audiofile avresample avx bash-completion bdf bluray bzip2 cairo caps cb cdda cdparanoia cdr cjk corefonts crypt cups curl cxx declarative detex device-mapper dga dia djvu dts dvd dvi2tty dvipdfm ebook egl exif fam ffmpeg fftw fits flac fontconfig g3dvl gallium gbm gcrypt gif gimp git glamor glib gmp gnuplot gnutls gold gpm graphics graphviz gs gstreamer gtk gtk3 hardened highlight iconv icu id3tag idn imagemagick imlib inotify iproute2 ipv6 jbig jpeg jpeg2k jpg json kde kde4 kpathsea latex lcms libffi libssh2 libtirpc libv4l luatex lvm lvm2 lzma lzo man metric mikmod mkv mms mmx mng mp3 mpeg mpg123 multilib multimedia musepack ncurses netlink nptl nut ocr odbc offensive ogg opengl openmp openvg optimization optimized-qmake opus pam pango pcre pdf pgf phonon pie png postscript private-headers pstricks pth publishers python3 qt3support qt4 raw readline samba sbsms scanner science sdl seccomp smp sna sndfile speex spell sqlite sse sse2 sse3 sse4 sse41 sse4_1 sse4_2 ssh ssl ssp ssse3 svg t1lib tesseract test theora threads tiff tls truetype udev unicode usb v4l v4l2 vaapi video vorbis vpx webp wmf x264 xanim xattr xcb xcomposite xetex xft xinerama xkb xml xmlpatterns xorg xosd xpm xrandr xtpax xv xvid xvmc xz zlib zsh-completion" ABI_X86="32 64" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx sse sse2 avx sse3 ssse3 sse4_1 aes avx mmxext popcnt sse3 sse4_1 sse4_2 ssse3" CURL_SSL="openssl" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64" INPUT_DEVICES="evdev synaptics" KERNEL="linux" L10N="en en-US en-GB eng" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LLVM_TARGETS="AArch64 ARM BPF X86" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-3 php5-4" POSTGRES_TARGETS="postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_4 python3_5 python3_6 python3_7" QEMU_SOFTMMU_TARGETS="x86_64 i386" RUBY_TARGETS="ruby23" SANE_BACKENDS="plustek" USERLAND="GNU" VIDEO_CARDS="intel i965 ilo" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS eroen@occam ~ $ emerge -pqv '=dev-python/cython-0.29::gentoo' [ebuild U ] dev-python/cython-0.29 [0.28.4] USE="test -doc -emacs" PYTHON_TARGETS="python2_7 python3_4 python3_5 python3_6 python3_7"
My first guess would be to blame your CFLAGS. Could you try to figure out why is the compiler failing? I suppose the error messages might be hidden somewhere; alternative, just try running it manually as seen in error message: distutils.errors.DistutilsExecError: Command "x86_64-pc-linux-gnu-gcc -march=corei7-avx -pipe -Og -g -gdwarf-4 -fno-strict-overflow -fPIC -I/var/tmp/portage/dev-python/cython-0.29/work/Cython-0.29/tests/run -I/usr/include/python3.4m -c parallel.c -o /var/tmp/portage/dev-python/cython-0.29/work/Cython-0.29-python3_4/tests/run/c/parallel/parallel.o -march=corei7-avx -pipe -Og -g -gdwarf-4 -fno-strict-overflow -DCYTHON_REFNANNY=1 -fopenmp" failed with exit status 1 (you'll need to figure out the correct directory, and possibly run it from failed tree to have .c files generated)
Created attachment 579056 [details] build.log Test failures with 0.29.4 on sparc
Created attachment 579216 [details] build.log 0.29.7 on sparc
Closing old cython bugs.
