Created attachment 546686 [details] full build log /var/tmp/portage/sys-cluster/mpich-3.2-r1/work/mpich-3.2/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c: In function ‘HYDT_topo_hwloc_init’: /var/tmp/portage/sys-cluster/mpich-3.2-r1/work/mpich-3.2/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c:432:40: error: ‘HWLOC_MEMBIND_REPLICATE’ undeclared (first use in this function) HYDT_topo_hwloc_info.membind = HWLOC_MEMBIND_REPLICATE; ^~~~~~~~~~~~~~~~~~~~~~~ /var/tmp/portage/sys-cluster/mpich-3.2-r1/work/mpich-3.2/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c:432:40: note: each undeclared identifier is reported only once for each function it appears in emerge --info output: Portage 2.3.49 (python 2.7.15-final-0, default/linux/amd64/17.0/no-multilib/hardened, gcc-6.4.0, glibc-2.27-r6, 3.3.2-hardened x86_64) ================================================================= System uname: Linux-3.3.2-hardened-x86_64-Intel-R-_Core-TM-_i7_CPU_930_@_2.80GHz-with-gentoo-2.6 KiB Mem: 8167824 total, 387432 free KiB Swap: 16016792 total, 15807852 free Timestamp of repository gentoo: Tue, 11 Sep 2018 09:45:01 +0000 Head commit of repository gentoo: fc08fb764aaf1c7040d10567f434147567fb0aad sh bash 4.4_p23 ld GNU ld (Gentoo 2.29.1 p2) 2.29.1 app-shells/bash: 4.4_p23::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.26.2::gentoo dev-lang/python: 2.7.15::gentoo, 3.6.6::gentoo dev-util/cmake: 3.12.2::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.38.2::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.69-r4::gentoo sys-devel/automake: 1.13.4-r1::gentoo, 1.15.1-r2::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.29.1-r1::gentoo, 2.30-r3::gentoo, 2.31.1::gentoo sys-devel/gcc: 5.4.0-r4::gentoo, 6.4.0-r2::gentoo, 7.3.0-r3::gentoo, 8.1.0-r3::gentoo, 8.2.0-r2::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 4.17::gentoo (virtual/os-headers) sys-libs/glibc: 2.27-r6::gentoo Repositories: gentoo location: /usr/portage sync-type: rsync sync-uri: rsync://rsync.us.gentoo.org/gentoo-portage priority: -1000 sync-rsync-verify-jobs: 1 sync-rsync-verify-metamanifest: yes sync-rsync-extra-opts: sync-rsync-verify-max-age: 24 x-portage location: /usr/local/portage masters: gentoo priority: 0 gentoo-xvilka location: /var/lib/layman/gentoo-xvilka masters: gentoo priority: 1 godin location: /var/lib/layman/godin masters: gentoo priority: 50 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="* -@EULA dlj-1.1" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-march=core2 -mtune=generic -O2 -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/bind /var/qmail/alias /var/qmail/control /var/spool/munin-async/.ssh /var/vpopmail/etc" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c" CXXFLAGS="-march=core2 -mtune=generic -O2 -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync multilib-strict news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://distfiles.gentoo.org" LANG="en_US.UTF-8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="acl amd64 bzip2 crypt cvs cxx git gnutls hardened iconv ipv6 libtirpc lighttpd mercurial mmx ncurses nls nptl openmp pam pcre perl php pie postgresql python readline sbcl seccomp sse sse2 sse4 ssl ssp ssse3 subversion unicode xattr xml xmlrpc xsl xtpax zlib" ABI_X86="64" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_6" PYTHON_TARGETS="python2_7 python3_6" RUBY_TARGETS="ruby24" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
Same issue here, my emerge --info: 22:49:07 ~ # emerge --info =sys-cluster/mpich-3.2-r1 Portage 2.3.49 (python 3.5.5-final-0, default/linux/amd64/17.0/desktop/gnome/systemd, gcc-7.3.0, glibc-2.27-r6, 4.17.11-gentoo x86_64) ================================================================= System Settings ================================================================= System uname: Linux-4.17.11-gentoo-x86_64-Intel-R-_Core-TM-_i7-6700HQ_CPU_@_2.60GHz-with-gentoo-2.6 KiB Mem: 24545868 total, 14703328 free KiB Swap: 8388604 total, 8388604 free Head commit of repository gentoo: 2d90b6ccf5fe0829ec58bd8bf886e8758e665ee5 sh bash 4.4_p23 ld GNU ld (Gentoo 2.31.1 p2) 2.31.1 app-shells/bash: 4.4_p23::gentoo dev-java/java-config: 2.2.0-r4::gentoo dev-lang/perl: 5.26.2::gentoo dev-lang/python: 2.7.15::gentoo, 3.5.5-r1::gentoo, 3.6.6::gentoo, 3.7.0::gentoo dev-util/cmake: 3.12.2::gentoo dev-util/pkgconfig: 0.29.2::gentoo sys-apps/baselayout: 2.6-r1::gentoo sys-apps/openrc: 0.38.1::gentoo sys-apps/sandbox: 2.13::gentoo sys-devel/autoconf: 2.13::gentoo, 2.69-r4::gentoo sys-devel/automake: 1.9.6-r5::gentoo, 1.11.6-r3::gentoo, 1.16.1-r1::gentoo sys-devel/binutils: 2.30-r3::gentoo, 2.31.1::gentoo sys-devel/gcc: 7.3.0-r3::gentoo, 8.2.0-r2::gentoo sys-devel/gcc-config: 2.0::gentoo sys-devel/libtool: 2.4.6-r5::gentoo sys-devel/make: 4.2.1-r4::gentoo sys-kernel/linux-headers: 4.17::gentoo (virtual/os-headers) sys-libs/glibc: 2.27-r6::gentoo Repositories: anyc location: /var/lib/layman/anyc masters: gentoo priority: 50 pentoo location: /var/lib/layman/pentoo masters: gentoo priority: 50 tlp location: /var/lib/layman/tlp masters: gentoo priority: 60 drunkard location: /var/lib/layman/drunkard masters: gentoo priority: 80 gentoo location: /usr/portage sync-type: git sync-uri: git://anongit.gentoo.org/repo/gentoo.git priority: 9999 ACCEPT_KEYWORDS="amd64 ~amd64" ACCEPT_LICENSE="*" CBUILD="x86_64-pc-linux-gnu" CFLAGS="-O2 -march=haswell -pipe" CHOST="x86_64-pc-linux-gnu" CONFIG_PROTECT="/etc /usr/lib64/libreoffice/program/sofficerc /usr/share/gnupg/qualified.txt /var/bind" CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" CXXFLAGS="-O2 -march=haswell -pipe" DISTDIR="/usr/portage/distfiles" ENV_UNSET="DBUS_SESSION_BUS_ADDRESS DISPLAY PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" FCFLAGS="-O2 -pipe" FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks downgrade-backup ebuild-locks fixlafiles merge-sync multilib-strict news nodoc noinfo parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" FFLAGS="-O2 -pipe" GENTOO_MIRRORS="http://mirrors.163.com/gentoo/ http://mirrors.sohu.com/gentoo/ http://mirrors.aliyun.com/gentoo/ http://mirrors.kernel.org/gentoo/ " LANG="en_US.utf8" LC_ALL="en_US.utf8" LDFLAGS="-Wl,-O1 -Wl,--as-needed" LINGUAS="zh zh-CN zh-HK zh-TW zh_CN zh_HK zh_TW en ru de bo ug" MAKEOPTS="-j9" PKGDIR="/usr/portage/packages" PORTAGE_CONFIGROOT="/" PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" PORTAGE_TMPDIR="/var/tmp" USE="X a52 aac aalib accessibility acl acpi aio alsa amd64 amr amrenc ao ap apm audit bash-completion berkdb bluetooth bluray branding broadway bzip2 cairo caps cdda cjk cleartype cli colord cracklib crypt cups cxx dbus dga djvu dri dri3 drm dts dvd dvdr eds egl emboss encode epoll evo exif fam ffmpeg flac flite fontconfig fortran gallium gconf gdbm gegl geoip gif gimp glamor gles gles2 gnome gnome-keyring gnome-online-accounts gpm gstreamer gtk gtk3 hidpi http2 iconv icu idn imagemagick inotify introspection ipv6 jack jit jpeg jpeg2k kdbus kms lcms libass libbluray libinput libnotify libsecret libtirpc linguas_bo linguas_de linguas_en linguas_ru linguas_ug linguas_zh linguas_zh_CN linguas_zh_HK linguas_zh_TW lz4 lzma lzo mad mime minizip mmap mng modules mp3 mp4 mpeg mpi mtp multilib natspec nautilus ncurses networkmanager nls nptl ogg openal opencc opencl openexr opengl openmp opus pam pango pcre pdf png policykit postgres postscript ppds pulseaudio raw readline realtime sdl seccomp sftp smp ssh ssl startup-notification svg systemd theora threads tiff tracker truetype udev udisks unicode upower usb usbredir v4l v4l2 vaapi vdpau vim-syntax vorbis vpx vulkan wayland webp wifi wxwidgets x264 x265 xattr xcb xinerama xkb xml xmp xpm xrandr xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="hda-intel" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="karbon plan sheets stage words" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="aes avx avx2 f16c fma3 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" CURL_SSL="openssl" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" GRUB_PLATFORMS="efi-64 pc" INPUT_DEVICES="evdev keyboard libinput mouse" KERNEL="linux" L10N="zh zh-CN zh-HK zh-TW zh_CN zh_HK zh_TW en ru de bo ug" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5 postgres10" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5 python3_7" QEMU_SOFTMMU_TARGETS="i386 x86_64" QEMU_USER_TARGETS="i386 x86_64" RUBY_TARGETS="ruby23 ruby25" SANE_BACKENDS="hp hp3500" USERLAND="GNU" VIDEO_CARDS="nouveau intel i965 v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account" Unset: CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS ================================================================= Package Settings ================================================================= sys-cluster/mpich-3.2-r1::gentoo was built with the following: USE="cxx fortran mpi-threads threads -doc -romio" ABI_X86="(64) -32 (-x32)" CFLAGS="" CXXFLAGS="" LDFLAGS=""
Thanks for the report Anton. I suspect you're using the newer version of sys-apps/hwloc (2.0.2). Can you verify? If so this is just a simple fix to depend on the earlier api.
(In reply to Justin Bronder from comment #2) > Thanks for the report Anton. I suspect you're using the newer version of > sys-apps/hwloc (2.0.2). Can you verify? If so this is just a simple fix to > depend on the earlier api. I'm not Anton, but I've got the same problem - and yes, I'm using hwloc 2.02. But wouldn't it be more correct to fix mpich so it compiles with 2.0.2 instead of depending on the earlier api?
(In reply to Justin Bronder from comment #2) > Thanks for the report Anton. I suspect you're using the newer version of > sys-apps/hwloc (2.0.2). Can you verify? If so this is just a simple fix to > depend on the earlier api. Yes, I confirm, it is sys-apps/hwloc-2.0.2
(In reply to Mark Nowiasz from comment #3) > (In reply to Justin Bronder from comment #2) > > Thanks for the report Anton. I suspect you're using the newer version of > > sys-apps/hwloc (2.0.2). Can you verify? If so this is just a simple fix to > > depend on the earlier api. > > I'm not Anton, but I've got the same problem - and yes, I'm using hwloc 2.02. > > But wouldn't it be more correct to fix mpich so it compiles with 2.0.2 > instead of depending on the earlier api? Upstream is targeting their next release for hwloc-2. https://lists.mpich.org/pipermail/discuss/2017-November/005333.html
commit 129c642f382736c1b95f7aadda15ed7f0fbed6b7 Author: Justin Bronder <jsbronder@gentoo.org> Date: Fri Sep 21 09:41:37 2018 -0400 sys-cluster/mpich: dep on hwloc-1 The new hwloc api is not supported yet, upstream is working on it. https://lists.mpich.org/pipermail/discuss/2017-November/005333.html Fixes #665752. Package-Manager: Portage-2.3.40, Repoman-2.3.9
