665676 – sci-biology/goby-2.3.5 - version bump and eventual 3.3.1 addition too

Bug 665676 - sci-biology/goby-2.3.5 - version bump and eventual 3.3.1 addition too

Summary: sci-biology/goby-2.3.5 - version bump and eventual 3.3.1 addition too

Status:	RESOLVED OBSOLETE

Alias:	None

Product:	Gentoo Linux
Classification:	Unclassified
Component:	Current packages (show other bugs)
Hardware:	All Linux

Importance:	Normal normal
Assignee:	Gentoo Science Biology related packages

URL:
Whiteboard:
Keywords:

Depends on:	665674
Blocks:
	Show dependency tree

Reported:	2018-09-11 07:17 UTC by Martin Mokrejš
Modified:	2019-09-14 15:41 UTC (History)
CC List:	1 user (show)

See Also:
Package list:
Runtime testing required:	---

Attachments
goby-2.3.5.ebuild (goby-2.3.5.ebuild,1.39 KB, text/plain) 2018-09-11 07:20 UTC, Martin Mokrejš	Details
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Description Martin Mokrejš 2018-09-11 07:17:51 UTC

There are compile issues with sci-biology/goby-cpp-2.0.1 under #595154, #597050, #660696 which is supposedly a part of goby-2.0.1 bundle. The last release of the v2 series is 2.3.5. I had a look into this but there are some new deps needed and I am unable to finish this task. If somebody wants to pursue java ebuild using ant and possibly maven, go ahead. I will attach an incomplete ebuild with updated EGIT_REPO_URI, HOMEPAGE, SRC_URI, COMMON_DEPS with added dev-java/fastutil and dev-java/dsiutils (bug #665674) lines.


sci-biology/goby-3.3.1 is again a different story as they shifted to maven and changed URLs to:

HOMEPAGE="http://campagnelab.org/software/goby/"
SRC_URI="https://github.com/CampagneLaboratory/goby3/archive/r${PV}.tar.gz -> ${P}.tar.gz"

Comment 1 Martin Mokrejš 2018-09-11 07:20:52 UTC

Created attachment 546588 [details]
goby-2.3.5.ebuild

Incomplete

Comment 2 Michał Górny archtester

2019-09-14 15:41:06 UTC

The package is being removed.