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Bug 640696 - app-portage/gentoolkit-0.4.0 - there are files installed outside the prefix
Summary: app-portage/gentoolkit-0.4.0 - there are files installed outside the prefix
Status: RESOLVED TEST-REQUEST
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal QA (vote)
Assignee: Portage Tools Team
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2017-12-11 15:44 UTC by Martin Mokrejš
Modified: 2021-04-01 03:11 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,142.59 KB, text/plain)
2017-12-11 15:45 UTC, Martin Mokrejš
Details

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Description Martin Mokrejš 2017-12-11 15:44:47 UTC
Hi,
  I have Gentoo:RAP installation and it seems this is an issue with ebuild.

>>> Completed installing gentoolkit-0.4.0 into /apps/gentoo/var/tmp/portage/app-portage/gentoolkit-0.4.0/image/

 * Final size of build directory: 12288 KiB
 * Final size of installed tree: 11896 KiB

 * QA Notice: the following files are outside of the prefix:
 * /etc
 * /etc/env.d
 * /etc/env.d/99gentoolkit-env
 * /etc/revdep-rebuild
 * /etc/revdep-rebuild/99revdep-rebuild
 * /etc/eclean
 * /etc/eclean/distfiles.exclude
 * /etc/eclean/packages.exclude
 * /usr
 * /usr/lib
 * /usr/lib/tmpfiles.d
 * /usr/lib/tmpfiles.d/revdep-rebuild.conf
 * /usr/share
 * /usr/share/man
 * /usr/share/man/man1
 * /usr/share/man/man1/ebump.1
 * /usr/share/man/man1/equery.1
 * /usr/share/man/man1/revdep-rebuild.1
 * /usr/share/man/man1/epkginfo.1
 * /usr/share/man/man1/eread.1
 * /usr/share/man/man1/euse.1
 * /usr/share/man/man1/eshowkw.1
 * /usr/share/man/man1/imlate.1
 * /usr/share/man/man1/eclean.1
 * /usr/share/man/man1/glsa-check.1
 * /usr/share/man/man1/enalyze.1
 * ERROR: app-portage/gentoolkit-0.4.0::gentoo failed:
 *   Aborting due to QA concerns: there are files installed outside the prefix
 * 
 * Call stack:
 *   misc-functions.sh, line 603:  Called install_qa_check
 *   misc-functions.sh, line 217:  Called source 'install_symlink_html_docs'
 *            05prefix, line 114:  Called install_qa_check_prefix
 *            05prefix, line  27:  Called die
 * The specific snippet of code:
 *   			die "Aborting due to QA concerns: there are files installed outside the prefix"
 * 
 * If you need support, post the output of `emerge --info '=app-portage/gentoolkit-0.4.0::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=app-portage/gentoolkit-0.4.0::gentoo'`.
 * The complete build log is located at '/apps/gentoo/var/tmp/portage/app-portage/gentoolkit-0.4.0/temp/build.log'.
 * The ebuild environment file is located at '/apps/gentoo/var/tmp/portage/app-portage/gentoolkit-0.4.0/temp/environment'.
 * Working directory: '/apps/gentoo/var/tmp/portage/app-portage/gentoolkit-0.4.0/image/apps/gentoo'
 * S: '/apps/gentoo/var/tmp/portage/app-portage/gentoolkit-0.4.0/work/gentoolkit-0.4.0'
!!! post install failed; exiting.

>>> Failed to emerge app-portage/gentoolkit-0.4.0, Log file:

>>>  '/apps/gentoo/var/tmp/portage/app-portage/gentoolkit-0.4.0/temp/build.log'
Comment 1 Martin Mokrejš 2017-12-11 15:45:15 UTC
Created attachment 509360 [details]
build.log
Comment 2 Martin Mokrejš 2017-12-11 15:48:09 UTC
$ emerge --info '=app-portage/gentoolkit-0.4.0::gentoo'
!!! Section 'gentoo_prefix' in repos.conf has name different from repository name 'gentoo' set inside repository
WARNING: One or more repositories have missing repo_name entries:

	/apps/gentoo/usr/local/portage/profiles/repo_name

NOTE: Each repo_name entry should be a plain text file containing a
unique name for the repository on the first line.


Portage 2.3.6 (python 2.7.14-final-0, prefix/linux-standalone/amd64, gcc-4.9.4, glibc-2.24-r1, 2.6.32-696.10.3.el6.x86_64 x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-2.6.32-696.10.3.el6.x86_64-x86_64-Intel-R-_Xeon-R-_CPU_E5-2695_v3_@_2.30GHz-with-centos-6.9-Final
KiB Mem:   132049160 total,   9675060 free
KiB Swap:    2097148 total,   1506772 free
Timestamp of repository gentoo: Mon, 11 Dec 2017 13:00:01 +0000
sh bash 4.4_p12
ld GNU ld (Gentoo 2.27 p1.0) 2.27
app-shells/bash:          4.4_p12::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.1-r1::gentoo
dev-lang/python:          2.7.14-r1::gentoo, 3.4.6::gentoo, 3.5.4-r1::gentoo, 3.6.1-r1::gentoo
dev-util/cmake:           3.10.0::gentoo
dev-util/pkgconfig:       0.29.2::gentoo
sys-apps/baselayout:      2.4.1-r2::gentoo
sys-apps/sandbox:         2.12::gentoo
sys-devel/autoconf:       2.13::gentoo, 2.69-r4::gentoo
sys-devel/automake:       1.14.1-r1::gentoo, 1.15.1-r1::gentoo
sys-devel/binutils:       2.27::gentoo, 2.29::gentoo, 2.29.1-r1::gentoo
sys-devel/gcc:            3.4.6-r2::gentoo, 4.1.2::gentoo, 4.2.4-r1::gentoo, 4.4.7::gentoo, 4.5.4::gentoo, 4.7.4::gentoo, 4.8.5::gentoo, 4.9.3::gentoo, 4.9.4::gentoo, 5.4.0-r3::gentoo, 6.3.0::gentoo, 7.1.0-r1::gentoo
sys-devel/gcc-config:     1.9.0-r1::gentoo
sys-devel/libtool:        2.4.6-r4::gentoo
sys-devel/make:           4.2.1-r1::gentoo
sys-kernel/linux-headers: 4.13::gentoo (virtual/os-headers)
sys-libs/glibc:           2.24-r1::gentoo
Repositories:

gentoo
    location: /apps/gentoo/usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

x-portage
    location: /apps/gentoo/usr/local/portage
    masters: gentoo
    priority: 0

haskell
    location: /apps/gentoo/var/lib/layman/haskell
    masters: gentoo
    priority: 50

science
    location: /apps/gentoo/var/lib/layman/science
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64 ~amd64-linux"
ACCEPT_LICENSE="* -@EULA dlj-1.1 sun-bcla-java-vm Oracle-BCLA-JavaSE IBM-J1.6 skype-eula Nero-EULA-US AdobeFlash-10.3 skype-4.0.0.7-copyright AdobeFlash-11.x Intel-SDP OPERA-2014"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe -O2 -pipe -march=native -ftree-vectorize"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /usr/share/maven-bin-3.3/conf"
CONFIG_PROTECT_MASK="/apps/gentoo/etc/gentoo-release /etc/ca-certificates.conf /etc/dconf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-O2 -pipe -O2 -pipe -march=native -ftree-vectorize"
DISTDIR="/apps/gentoo/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles force-prefix merge-sync news nostrip parallel-fetch preserve-libs protect-owned sfperms splitdebug strict unknown-features-warn unmerge-logs unmerge-orphans unprivileged"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://ftp.fi.muni.cz/pub/linux/gentoo/ http://gentoo.mirror.web4u.cz/ rsync://gentoo.mirror.dkm.cz/gentoo/ ftp://gentoo.mirror.web4u.cz/"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j1"
PKGDIR="/apps/gentoo/usr/portage/packages"
PORTAGE_CONFIGROOT="/apps/gentoo/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/apps/gentoo/var/tmp"
USE="X alsa amd64 apache apache2 avx avx2 berkdb boost bzip2 cairo cgi cli coin cracklib crypt cryptlib cxx dbus device-mapper dhcp dri emboss encode fax fbcon ffmpeg fontconfig fortran gbm gd gdbm gimp glpk gnutls gtk hal hwdb iconv imaging innodb ithreads java javafx javascript jce jpeg jpg js jscript keymap ladspa lapack lcms libnotify lm_sensors mad mmx modules mpi mpich2 mysql ncurses nfs nls nptl nptlonly nscd objc openmp openssl pcre pdf perl php png policykit polkit ppds pppd prefix python qt3support readline resolvconf seccomp server session slideshow sndfile sqlite sse sse2 sse3 sse4_1 sse4_2 ssl ssse3 suexec svg syslog tcl tcpd threads tiff tk truetype unicode usb v4l v4l2 vim-syntax vnc wavpack wifi x11 xcb xml xorg xrandr xv xvid xvmc zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="avx avx2 fma3 mmx mmxext popcnt sse sse2 sse3 sse4_1 sse4_2 ssse3" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en_US en_GB en cs" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6 php7-0" POSTGRES_TARGETS="postgres9_5" PYTHON_SINGLE_TARGET="python3_5" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby21 ruby22 ruby24" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS

=================================================================
                        Package Settings
=================================================================

app-portage/gentoolkit-0.4.0::gentoo was built with the following:
USE="(prefix)" PYTHON_TARGETS="python2_7 python3_4 -pypy -python3_5"

$ cat /apps/gentoo/etc/portage/repos.conf/gentoo.conf 
[DEFAULT]
main-repo = gentoo

[gentoo]
location = /apps/gentoo/usr/portage
sync-type = rsync
sync-uri = rsync://rsync.gentoo.org/gentoo-portage
$
Comment 3 Martin Mokrejš 2018-02-13 22:36:16 UTC
Still happens with app-portage/gentoolkit-0.4.2
Comment 4 Benda Xu gentoo-dev 2018-02-18 02:44:02 UTC
Interesting.  I cannot reproduce this bug so far.
Comment 5 Martin Mokrejš 2018-02-20 16:48:15 UTC
Now it does not for happen for me either on one host:

>>> Completed installing gentoolkit-0.4.2 into /apps/gentoo/var/tmp/portage/app-portage/gentoolkit-0.4.2/image/

 * Final size of build directory: 12212 KiB (11.9 MiB)
 * Final size of installed tree:  11656 KiB (11.3 MiB)

 * prefixing shebang of apps/gentoo/usr/bin/revdep-rebuild.sh
 * prefixing shebang of apps/gentoo/usr/bin/eread
 * prefixing shebang of apps/gentoo/usr/bin/ebump
 * prefixing shebang of apps/gentoo/usr/bin/euse
ecompressdir: bzip2 -9 /usr/share/doc
ecompressdir: bzip2 -9 /usr/share/man



On a different host I get:

Calculating dependencies... done!
[ebuild  N     ] app-crypt/gentoo-keys-201607021514-r2 
[ebuild     U  ] dev-libs/libassuan-2.5.1 [2.4.3-r1]
[ebuild  N     ] dev-python/bz2file-0.98  PYTHON_TARGETS="python2_7 -pypy" 
[ebuild     U  ] app-crypt/gnupg-2.2.4-r2 [2.1.21] USE="ssl%*" 
[ebuild  N     ] app-portage/gemato-11.2  USE="blake2 bzip2 gpg -lzma -sha3 {-test}" PYTHON_TARGETS="python2_7 python3_5 -pypy -python3_4 -python3_6" 
[ebuild     U  ] sys-apps/portage-2.3.24-r1 [2.3.6] USE="rsync-verify%* -gentoo-dev%" PYTHON_TARGETS="python3_5* -python3_4*" 
[ebuild     U  ] app-portage/gentoolkit-0.4.2 [0.4.0] PYTHON_TARGETS="python3_5* -python3_4* -python3_6%" 



I will need to resolve some conflicts to investigate if the issue persists there too (supposedly yes):

sys-apps/portage:0

  (sys-apps/portage-2.3.24-r1:0/0::gentoo, ebuild scheduled for merge) pulled in by
    sys-apps/portage[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] required by (app-portage/flaggie-0.2.1:0/0::gentoo, ebuild scheduled for merge)
                                                                                                                                                                                                                                                                                                                                                                                                                                            

  (sys-apps/portage-2.3.6:0/0::gentoo, installed) pulled in by
    >=sys-apps/portage-2.3.0_rc[python_targets_python2_7(-),python_targets_python3_4(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] required by (app-portage/repoman-2.3.2:0/0::gentoo, installed)
                                                                                                                                                                                                                                                                                                                    
    sys-apps/portage[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] required by (app-portage/layman-2.4.2:0/0::gentoo, installed)
                                                                                                                                                                                                                                                                                                                                                                                                                          
    sys-apps/portage[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] required by (app-portage/gentoolkit-0.4.0:0/0::gentoo, installed)
                                                                                                                                                                                                                                                                                                                                                                                                                              
    sys-apps/portage[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] required by (app-portage/diffmask-0.3.3-r2:0/0::gentoo, installed)
                                                                                                                                                                                                                                                                                                                                                                                                                               
    sys-apps/portage[python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] required by (dev-java/java-config-2.2.0-r3:2/2::gentoo, installed)
                                                                                                                                                                                                                                                                                                                                                                         
    sys-apps/portage[python_targets_pypy(-)?,python_targets_python2_7(-)?,python_targets_python3_4(-)?,python_targets_python3_5(-)?,python_targets_python3_6(-)?,-python_single_target_pypy(-),-python_single_target_python2_7(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-)] required by (app-admin/webapp-config-9999:0/0::gentoo, installed)
Comment 6 Sam James archtester Gentoo Infrastructure gentoo-dev Security 2021-04-01 03:11:38 UTC
Still an issue?