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Bug 638714 - sci-biology/plink-1.90_pre140514 : /.../liblapack.so: undefined reference to _gfortran_string_len_trim@GFORTRAN_1.0
Summary: sci-biology/plink-1.90_pre140514 : /.../liblapack.so: undefined reference to ...
Status: RESOLVED WORKSFORME
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2017-11-24 16:59 UTC by Toralf Förster
Modified: 2018-06-26 19:45 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
emerge-info.txt (emerge-info.txt,16.05 KB, text/plain)
2017-11-24 16:59 UTC, Toralf Förster 		Details
emerge-history.txt (emerge-history.txt,237.08 KB, text/plain)
2017-11-24 16:59 UTC, Toralf Förster 		Details
environment (environment,75.84 KB, text/plain)
2017-11-24 16:59 UTC, Toralf Förster 		Details
etc.portage.tbz2 (etc.portage.tbz2,17.70 KB, application/x-bzip)
2017-11-24 16:59 UTC, Toralf Förster 		Details
sci-biology:plink-1.90_pre140514:20171124-052324.log (sci-biology:plink-1.90_pre140514:20171124-052324.log,18.46 KB, text/plain)
2017-11-24 16:59 UTC, Toralf Förster 		Details
View All Add an attachment (proposed patch, testcase, etc.)

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Description Toralf Förster gentoo-dev 2017-11-24 16:59:17 UTC 
                                                         ~~~~~^
/usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: warning: libgfortran.so.3, needed by /usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/liblapack.so, not found (try using -rpath or -rpath-link)
/usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/liblapack.so: undefined reference to `_gfortran_string_len_trim@GFORTRAN_1.0'
/usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/liblapack.so: undefined reference to `_gfortran_transfer_integer_write@GFORTRAN_1.4'
/usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/liblapack.so: undefined reference to `_gfortran_concat_string@GFORTRAN_1.0'
/usr/lib/gcc/x86_64-pc-linux-gnu/7.2.0/../../../../lib64/liblapack.so: undefined reference to `_gfortran_stop_string@GFORTRAN_1.0'

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 13.0-no-multilib_libressl_20171119-113915

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-7.2.0 *

Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python3.6 (fallback)
  [3]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby22 (with Rubygems) *
java-config:
The following VMs are available for generation-2:


emerge -qpv sci-biology/plink
[ebuild  N    ] sci-biology/plink-1.90_pre140514
Comment 1 Toralf Förster gentoo-dev 2017-11-24 16:59:20 UTC 
Created attachment 506344 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2017-11-24 16:59:23 UTC 
Created attachment 506346 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2017-11-24 16:59:25 UTC 
Created attachment 506348 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2017-11-24 16:59:28 UTC 
Created attachment 506350 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2017-11-24 16:59:31 UTC 
Created attachment 506352 [details]
sci-biology:plink-1.90_pre140514:20171124-052324.log
Comment 6 Pacho Ramos gentoo-dev 2018-06-26 12:40:32 UTC 
are you still able to reproduce this?
Comment 7 Toralf Förster gentoo-dev 2018-06-26 19:45:50 UTC 
(In reply to Pacho Ramos from comment #6)
not with current images