please add ~amd64 to app-sci/ecell-3.1.102 Reproducible: Always Steps to Reproduce: 1. 2. 3. Portage 2.0.50-r11 (default-amd64-2004.0, gcc-3.3.4, glibc-2.3.4.20040808-r0, 2.6.7-gentoo-r9) ================================================================= System uname: 2.6.7-gentoo-r9 x86_64 AMD Athlon(tm) 64 Processor 3000+ Gentoo Base System version 1.5.3 Autoconf: sys-devel/autoconf-2.59-r4 Automake: sys-devel/automake-1.8.5-r1 ACCEPT_KEYWORDS="amd64 ~amd64" AUTOCLEAN="yes" CFLAGS="-O2 -pipe -fomit-frame-pointer" CHOST="x86_64-pc-linux-gnu" COMPILER="" CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config /usr/kde/3.2/share/config /usr/kde/3.3/share/config:/usr/kde/3.3/env:/usr/kde/3.3/shutdown /usr/kde/3/share/config /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-O2 -pipe -fomit-frame-pointer" DISTDIR="/usr/portage/distfiles" FEATURES="autoaddcvs ccache" GENTOO_MIRRORS="http://gentoo.osuosl.org http://distro.ibiblio.org/pub/Linux/distributions/gentoo" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X acpi alsa amd64 apache2 arts artswrappersuid avi bcmath berkdb bootsplash bzlib cdr codecs crypt cups dga divx4linux dvd encode esd ex exif f77 fftw foomaticdb ftp gd gdbm gif gimp gimpprint gnuplot gphoto2 gpm gsl gtk gtk2 imagemagick imap imlib java jpeg kde libg++ libwww mikmod motif moznoirc moznomail moznoxft mpeg multilib mupad-noscilab mysql nas ncurses nls nogcj oggvorbis opengl oss pam pcmcia pcre pdf pdflib pear-db perl php png ppds python qt quicktime readline rtc scanner sdl slang soap spell sqlite ssl tcltk tcpd tetex truetype usb xine xml2 xmms xosd xv zlib"
please tell us what you had to do to get the ebuild working, digests were missing here. you should be able to install the package with a simple emerge package (after adding ~amd64 to the keywords of course). also, i can't confirm that it works, i get several errors during the build. can someone confirm that or is it just my box?
I already filed bugs for that, see #63215 and #63221. GTK Mode seems to be borked, but command line mode works.
sorry, i can't confirm that, it fails also without gtk for me. setting dependency on #63221
Using the patch from 63221, the command line version (USE="-gtk") appears to compile correctly. I have not yet tested the gtk version, because my amd64 machine is a dedicated fileserver and I may not want to add too many extra unused packages. If anybody wants to test the gtk version then you will need to unmask, or keyword, dev-python/python-gtkextra and x11-libs/gtk+extra. ---------------------------- System info Opteron 240 1.4 Ghz portage-2.0.51_rc7 gcc-3.3.4-r2 glibc-2.3.4.20040808 CFLAGS="-O2 -mfpmath=sse -msse2 -mmmx -m3dnow" CHOST="x86_64-pc-linux-gnu" USE="-* f77 ssl apache2 maildir imap mmx sse 3dnow" CXXFLAGS="${CFLAGS}" ACCEPT_KEYWORDS="amd64 ~amd64"
I get an error with the patched version and USE="-gnome", looks like issues compiling with GCC 3.4. The error I get is, Polymorph.hpp: In member function `const T libecs::PolymorphValue::as() const': Polymorph.hpp:67: error: there are no arguments to `DefaultSpecializationInhibited' that depend on a template parameter, so a declaration of `DefaultSpecializationInhibited' must be available Polymorph.hpp:67: error: (if you use `-fpermissive', G++ will accept your code,but allowing the use of an undeclared name is deprecated) Polymorph.hpp: In member function `const T libecs::Polymorph::as() const': Polymorph.hpp:292: error: there are no arguments to `DefaultSpecializationInhibited' that depend on a template parameter, so a declaration of `DefaultSpecializationInhibited' must be available !!! ERROR: sci-biology/ecell-3.1.102-r1 failed. This needs attention as GCC 3.4 is now used on most amd64 systems.
i tested it with a gcc 3.4, could you provide your 'emerge info' please?
It basically says that you could change the flags passed to g++ to allow the code, but I just tried it again and it is failing for me at the same place. amd64 ~ # emerge info Portage 2.0.51-r3 (default-linux/amd64/2004.3, gcc-3.4.3, glibc-2.3.4.20041102-r0, 2.6.10-gentoo-r2 x86_64) ================================================================= System uname: 2.6.10-gentoo-r2 x86_64 AMD Athlon(tm) 64 Processor 3200+ Gentoo Base System version 1.4.16 ccache version 2.3 [enabled] Autoconf: sys-devel/autoconf-2.59-r5 Automake: sys-devel/automake-1.8.5-r1 Binutils: sys-devel/binutils-2.15.90.0.1.1-r3 Headers: sys-kernel/linux26-headers-2.6.8.1-r1 Libtools: sys-devel/libtool-1.5.2-r7 ACCEPT_KEYWORDS="amd64" AUTOCLEAN="yes" CFLAGS="-march=k8 -O2 -pipe" CHOST="x86_64-pc-linux-gnu" COMPILER="" CONFIG_PROTECT="/etc /usr/kde/2/share/config /usr/kde/3.3/env /usr/kde/3.3/share/config /usr/kde/3.3/shutdown /usr/kde/3/share/config /usr/lib/X11/xkb /usr/lib/mozilla/defaults/pref /usr/share/config /var/bind /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/texmf/web2c /etc/env.d" CXXFLAGS="-march=k8 -O2 -pipe" DISTDIR="/usr/portage/distfiles" FEATURES="autoaddcvs autoconfig buildpkg ccache cvs digest distlocks sandbox sign" GENTOO_MIRRORS="http://mir.zyrianes.net/gentoo/ ftp://mirror.nutsmaas.nl/gentoo/ http://ftp.easynet.nl/mirror/gentoo/" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="/usr/local/portage" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X aalib acl acpi aim alsa amd64 apache2 audiofile avi berkdb bitmap-fonts bonobo cdparanoia cdr crypt cscope cups curl directfb divx4linux doc dvd dvdr encode esd ethereal evo f77 fam fbcon fftw flac flash foomaticdb fortran gb gd gdbm gif gimpprint ginac gmp gphoto2 gpm gstreamer gtk gtk2 gtkhtml guile icq imagemagick imlib innodb ipv6 jabber java jikes joystick jp2 jpeg junit kde lcms ldaplibg++ libwww lzw lzw-tiff mad mcal mikmod motif mozilla mpeg mpi msn multilib mysql nas ncurses netcdf nls nptl odbc offensive oggvorbis opengl oscar oss pam pdflib perl plotutils png postgres ppds python qt quicktime readline samba sasl scanner sdl slang slp snmp spell sqlite ssl tcltk tcpd tetex tiff truetype truetype-fonts type1-fonts unicode usb userlocales vhosts videos wmf wxwindows xine xinerama xml xml2 xmms xpm xrandr xscreensaver xv xvid yahoo zlib linguas_en_GB"
apparently doesn't work
