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Bug 628636 - sci-biology/bioruby-1.4.3.0001-r1 : * ERROR: sci-biology/bioruby-1.4.3.0001-r1::gentoo failed (configure phase):
Summary: sci-biology/bioruby-1.4.3.0001-r1 : * ERROR: sci-biology/bioruby-1.4.3.0001-...
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
: 647642 (view as bug list)
Depends on:
Blocks:
 
Reported: 2017-08-22 17:38 UTC by Toralf Förster
Modified: 2018-04-14 07:25 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
emerge-info.txt (emerge-info.txt,17.36 KB, text/plain)
2017-08-22 17:38 UTC, Toralf Förster 		Details
emerge-history.txt (emerge-history.txt,406.01 KB, text/plain)
2017-08-22 17:38 UTC, Toralf Förster 		Details
environment (environment,161.86 KB, text/plain)
2017-08-22 17:38 UTC, Toralf Förster 		Details
etc.portage.tbz2 (etc.portage.tbz2,25.74 KB, application/x-bzip)
2017-08-22 17:38 UTC, Toralf Förster 		Details
sci-biology:bioruby-1.4.3.0001-r1:20170822-103032.log (sci-biology:bioruby-1.4.3.0001-r1:20170822-103032.log,2.56 KB, text/plain)
2017-08-22 17:38 UTC, Toralf Förster 		Details
View All Add an attachment (proposed patch, testcase, etc.)

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Description Toralf Förster gentoo-dev 2017-08-22 17:38:34 UTC 
=== This is an issue at stable ===


  -------------------------------------------------------------------

  This is an stable amd64 chroot image at a tinderbox (==build bot)
  name: 13.0-desktop_stable_20170812-191455

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-5.4.0 *
llvm-config:
3.9.1
Available Python interpreters, in order of preference:
  [1]   python3.4
  [2]   python2.7 (fallback)
  [3]   jython2.7 (fallback)
Available Ruby profiles:
  [1]   ruby21 (with Rubygems)
  [2]   ruby22 (with Rubygems) *
java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 7.2.6.10 [icedtea-bin-7]
2)	IcedTea JDK 3.4.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-7  system-vm
  [2]   icedtea-bin-8 

emerge -qpv sci-biology/bioruby
[ebuild  N    ] sci-biology/bioruby-1.4.3.0001-r1  USE="-doc {-test}" RUBY_TARGETS="ruby22"
Comment 1 Toralf Förster gentoo-dev 2017-08-22 17:38:37 UTC 
Created attachment 490162 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2017-08-22 17:38:40 UTC 
Created attachment 490164 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2017-08-22 17:38:43 UTC 
Created attachment 490166 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2017-08-22 17:38:46 UTC 
Created attachment 490168 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2017-08-22 17:38:49 UTC 
Created attachment 490170 [details]
sci-biology:bioruby-1.4.3.0001-r1:20170822-103032.log
Comment 6 Hans de Graaff gentoo-dev Security 2018-04-14 07:18:37 UTC 
*** Bug 647642 has been marked as a duplicate of this bug. ***
Comment 7 Hans de Graaff gentoo-dev Security 2018-04-14 07:25:02 UTC 
Fixed by marking bioruby 1.5.1 stable. bioruby 1.4.3.0001-r1 does not install or work with any current ruby implementation.