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Bug 625502 - sci-biology/meme fails tests ( FAIL: dreme1,dreme2,fasta-center1 ... )
Summary: sci-biology/meme fails tests ( FAIL: dreme1,dreme2,fasta-center1 ... )
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Deadline: 2020-10-09
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords: PMASKED, TESTFAILURE
Depends on:
Blocks:
 
Reported: 2017-07-18 11:57 UTC by Kent Fredric (IRC: kent\n) (RETIRED)
Modified: 2020-10-09 07:36 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
build.log (meme-4.11.2_p2:20170718-080339.log,230.93 KB, text/plain)
2017-07-18 11:57 UTC, Kent Fredric (IRC: kent\n) (RETIRED) 		Details
test-suite.log (test-suite.log,77.37 KB, text/plain)
2017-07-18 11:59 UTC, Kent Fredric (IRC: kent\n) (RETIRED) 		Details
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Description Kent Fredric (IRC: kent\n) (RETIRED) gentoo-dev 2017-07-18 11:57:37 UTC 
Created attachment 485374 [details]
build.log

Summary of failure contexts from test-suite.log

ImportError: No module named fasta-dinucleotide-shuffle

Error parsing test /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/fasta-center.test: Exec failed at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 157.

Can't exec "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/fasta-center": No such file or directory at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 156.

sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory

sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory

Error parsing test /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/pspgen.test: Exec failed at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 157

Can't exec "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/psp-gen": No such file or directory at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 156.
Comment 1 Kent Fredric (IRC: kent\n) (RETIRED) gentoo-dev 2017-07-18 11:59:04 UTC 
Created attachment 485376 [details]
test-suite.log
Comment 2 Michał Górny archtester Gentoo Infrastructure gentoo-dev Security 2020-10-09 07:36:48 UTC 
Package removed.