Please add ~amd64 to app-sci/kemistry-0.7 The -fPIC flag is needed to compile, though. Reproducible: Always Steps to Reproduce: 1. 2. 3. Portage 2.0.50-r10 (default-amd64-2004.0, gcc-3.3.4, glibc-2.3.4.20040808-r0, 2.6.7-gentoo-r9) ================================================================= System uname: 2.6.7-gentoo-r9 x86_64 AMD Athlon(tm) 64 Processor 3000+ Gentoo Base System version 1.5.3 Autoconf: sys-devel/autoconf-2.59-r4 Automake: sys-devel/automake-1.8.5-r1 ACCEPT_KEYWORDS="amd64 ~amd64" AUTOCLEAN="yes" CFLAGS="-O2 -fPIC" CHOST="x86_64-pc-linux-gnu" COMPILER="" CONFIG_PROTECT="/etc /usr/X11R6/lib/X11/xkb /usr/kde/2/share/config /usr/kde/3.2/share/config /usr/kde/3.3/share/config:/usr/kde/3.3/env:/usr/kde/3.3/shutdown /usr/kde/3/share/config /usr/share/config /usr/share/texmf/dvipdfm/config/ /usr/share/texmf/dvips/config/ /usr/share/texmf/tex/generic/config/ /usr/share/texmf/tex/platex/config/ /usr/share/texmf/xdvi/ /var/qmail/control" CONFIG_PROTECT_MASK="/etc/gconf /etc/terminfo /etc/env.d" CXXFLAGS="-O2 -fPIC" DISTDIR="/usr/portage/distfiles" FEATURES="autoaddcvs ccache" GENTOO_MIRRORS="http://gentoo.osuosl.org http://distro.ibiblio.org/pub/Linux/distributions/gentoo" MAKEOPTS="-j2" PKGDIR="/usr/portage/packages" PORTAGE_TMPDIR="/var/tmp" PORTDIR="/usr/portage" PORTDIR_OVERLAY="" SYNC="rsync://rsync.gentoo.org/gentoo-portage" USE="X acpi alsa amd64 apache2 arts avi berkdb cdr crypt cups dga divx4linux dvd encode esd f77 foomaticdb gd gdbm gif gimp gimpprint gphoto2 gpm gtk gtk2 imap imlib java jpeg kde libg++ libwww mikmod motif mpeg multilib mysql nas ncurses nls nogcj oggvorbis opengl oss pam pcmcia pdflib perl png ppds python qt quicktime readline scanner sdl slang spell ssl tcltk tcpd tetex truetype usb xml2 xmms xosd xv zlib"
Andreas, please remove that -fPIC from your CFLAGS when you test packages for us. This package fails with -fPIC issues. It needs a patch to its makefile, applied on all archs. /bin/sh ../libtool --silent --mode=link --tag=CXX g++ -Wnon-virtual-dtor -Wno-long-long -Wbad-function-cast -Wundef -Wall -pedantic -W -Wpointer-arith -Wmissing-prototypes -Wwrite-strings -ansi -D_XOPEN_SOURCE=500 -D_BSD_SOURCE -Wcast-align -Wconversion -DNDEBUG -DNO_DEBUG -O2 -march=k8 -O2 -pipe -ftracer -fno-exceptions -fno-check-new -DDATADIR=\"/usr/share/apps/openbabel\" -o libopenbabel_kemistry.la -rpath /usr/lib -L/usr/X11R6/lib64 -L/usr/qt/3/lib -L/usr/kde/3.3/lib -no-undefined -avoid-version atom.lo base.lo binary.lo binary_io.lo bond.lo chains.lo chiral.lo data.lo fileformat.lo generic.lo molchrg.lo mol.lo molvector.lo parsmart.lo parsmi.lo patty.lo phmodel.lo report.lo ring.lo rotor.lo smi.lo typer.lo formats.lo utils.lo residue.lo cml.lo /usr/lib/gcc/x86_64-pc-linux-gnu/3.4.1/../../../../x86_64-pc-linux-gnu/bin/ld: .libs/atom.o: relocation R_X86_64_32 can notbe used when making a shared object; recompile with -fPIC .libs/atom.o: could not read symbols: Bad value collect2: ld returned 1 exit status
~amd64, gcc3.4 and fPIC loving duly applied in cvs.
