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Bug 621012 - glsa-check portage.exception.InvalidAtom: <net-nds/rpcbind-0.2.4-r
Summary: glsa-check portage.exception.InvalidAtom: <net-nds/rpcbind-0.2.4-r
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Security
Classification: Unclassified
Component: GLSA Errors (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Security
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2017-06-06 12:03 UTC by Thomas Stein
Modified: 2017-06-10 11:08 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Thomas Stein 2017-06-06 12:03:38 UTC
Hello Devs.

Got a strange error this morning with glsa-check (0.3.3 + 0.4.0).

gentoolkit # glsa-check -t affected
Traceback (most recent call last):
  File "/usr/lib/python-exec/python2.7/glsa-check", line 186, in <module>
    if myglsa.isVulnerable():
  File "/usr/lib64/python2.7/site-packages/gentoolkit/glsa/__init__.py", line 683, in isVulnerable
    or (None != getMinUpgrade([v,], path["unaff_atoms"]))
  File "/usr/lib64/python2.7/site-packages/gentoolkit/glsa/__init__.py", line 410, in getMinUpgrade
    v_installed = reduce(operator.add, [match(v, "vartree") for v in vulnerableList], [])
  File "/usr/lib64/python2.7/site-packages/gentoolkit/glsa/__init__.py", line 347, in match
    return db.match(atom)
  File "/usr/lib64/python2.7/site-packages/portage/dbapi/vartree.py", line 574, in match
    origdep, mydb=self, use_cache=use_cache, settings=self.settings)
  File "/usr/lib64/python2.7/site-packages/portage/dbapi/dep_expand.py", line 35, in dep_expand
    mydep = Atom(mydep, allow_repo=True)
  File "/usr/lib64/python2.7/site-packages/portage/dep/__init__.py", line 1270, in __init__
    raise InvalidAtom(self)
portage.exception.InvalidAtom: <net-nds/rpcbind-0.2.4-r
gentoolkit #

Any idea how to solve this?

thanks and cheers

Reproducible: Always
Comment 1 Thomas Stein 2017-06-06 12:24:50 UTC
Portage 2.3.5 (python 2.7.12-final-0, default/linux/amd64/13.0, gcc-6.3.0, glibc-2.23-r3, 4.9.30 x86_64)
=================================================================
System uname: Linux-4.9.30-x86_64-Intel-R-_Xeon-R-_CPU_E3-1245_V2_@_3.40GHz-with-gentoo-2.3
KiB Mem:     4043684 total,     61224 free
KiB Swap:    2097148 total,   2096300 free
Timestamp of repository gentoo: Tue, 06 Jun 2017 11:30:01 +0000
sh bash 4.3_p48-r1
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p48-r1::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.1-r2::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/cmake:           3.7.2::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.26.3::gentoo
sys-apps/sandbox:         2.10-r3::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo, 2.26.1::gentoo
sys-devel/gcc:            5.4.0::gentoo, 6.3.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r3::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.4::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r3::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

x-portage
    location: /usr/local/portage
    masters: gentoo
    priority: 0

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/bind"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php7.1/ext-active/ /etc/php/cgi-php7.1/ext-active/ /etc/php/cli-php7.1/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LANG="en_GB.utf8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j3"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bzip2 cli cracklib crypt cxx dri fortran gdbm iconv modules multilib ncurses nls nptl openmp pam pcre readline seccomp session ssl tcpd unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="proxy_wstunnel proxy_html http2 cache_disk remoteip proxy_fcgi socache_shmcb unixd authn_core authz_core actions alias auth_form authn_dbd auth_digest auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias proxy proxy_ajp proxy_balancer proxy_connect proxy_ftp proxy_http proxy_scgi asis cern_meta charset_lite dbd dumpio ident imagemap log_forensic reqtimeout substitute version slotmem_shm" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock isync itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf skytraq superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="libinput keyboard mouse" KERNEL="linux" L10N="en de" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" LINGUAS="en de" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php7-1" PYTHON_SINGLE_TARGET="python3_4" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby22" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 2 Romain Riviere 2017-06-06 13:44:30 UTC
Confirmed. Looks like another typo in the GLSA metadata.
Comment 3 Kristian Fiskerstrand (RETIRED) gentoo-dev 2017-06-10 11:08:17 UTC
This was fixed in 

commit 95918b6e1cda1821d09f6758cb3c352202912087
Author: Thomas Deutschmann <whissi@gentoo.org>
Date:   Tue Jun 6 13:59:16 2017 +0200

    Fix GLSA 201706-07
    
    net-nds/rpcbind version in XML document was incomplete.