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Bug 601582 - dev-python/numpy-1.11.2-r1 and sci-libs/scipy-0.18.1 fails tests - error: invalid command 'config_fc'
Summary: dev-python/numpy-1.11.2-r1 and sci-libs/scipy-0.18.1 fails tests - error: inv...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords: TESTFAILURE
Depends on:
Blocks:
 
Reported: 2016-12-04 13:15 UTC by eroen
Modified: 2020-01-27 04:39 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,287.71 KB, text/plain)
2016-12-04 13:15 UTC, eroen
Details

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Description eroen 2016-12-04 13:15:53 UTC
Created attachment 455066 [details]
build.log

>>> Test phase: dev-python/numpy-1.11.2-r1
 * python2_7: running distutils-r1_run_phase python_test
/usr/bin/python2.7 setup.py egg_info --egg-base=/var/tmp/portage/dev-python/numpy-1.11.2-r1/work/numpy-1.11.2-python2_7/test/lib install --home=/var/tmp/portage/dev-python/numpy-1.11.2-r1/work/numpy-1.11.2-python2_7/test --install-lib=/var/tmp/portage/dev-python/numpy-1.11.2-r1/work/numpy-1.11.2-python2_7/test/lib --install-scripts=/var/tmp/portage/dev-python/numpy-1.11.2-r1/work/numpy-1.11.2-python2_7/test/scripts --single-version-externally-managed --record /var/tmp/portage/dev-python/numpy-1.11.2-r1/temp/record.txt config_fc --noopt --noarch --fcompiler=gnu95
Running from numpy source directory.
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
   or: setup.py --help [cmd1 cmd2 ...]
   or: setup.py --help-commands
   or: setup.py cmd --help

error: invalid command 'config_fc'
 * ERROR: dev-python/numpy-1.11.2-r1::gentoo failed (test phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  115:  Called src_test
 *   environment, line 4415:  Called distutils-r1_src_test
 *   environment, line 1273:  Called _distutils-r1_run_foreach_impl 'python_test'
 *   environment, line  322:  Called python_foreach_impl 'distutils-r1_run_phase' 'python_test'
 *   environment, line 3764:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test'
 *   environment, line 2845:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test'
 *   environment, line 2843:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test'
 *   environment, line  787:  Called distutils-r1_run_phase 'python_test'
 *   environment, line 1205:  Called python_test
 *   environment, line 4172:  Called distutils_install_for_testing '--single-version-externally-managed' '--record' '/var/tmp/portage/dev-python/numpy-1.11.2-r1/temp/record.txt' 'config_fc' '--noopt' '--noarch' '--fcompiler=gnu95'
 *   environment, line 1293:  Called esetup.py 'egg_info' '--egg-base=/var/tmp/portage/dev-python/numpy-1.11.2-r1/work/numpy-1.11.2-python2_7/test/lib' 'install' '--home=/var/tmp/portage/dev-python/numpy-1.11.2-r1/work/numpy-1.11.2-python2_7/test' '--install-lib=/var/tmp/portage/dev-python/numpy-1.11.2-r1/work/numpy-1.11.2-python2_7/test/lib' '--install-scripts=/var/tmp/portage/dev-python/numpy-1.11.2-r1/work/numpy-1.11.2-python2_7/test/scripts' '--single-version-externally-managed' '--record' '/var/tmp/portage/dev-python/numpy-1.11.2-r1/temp/record.txt' 'config_fc' '--noopt' '--noarch' '--fcompiler=gnu95'
 *   environment, line 1771:  Called die
 * The specific snippet of code:
 *       "${@}" || die "${die_args[@]}";
Comment 1 eroen 2016-12-04 13:16:21 UTC
localhost ~ # emerge --info '=dev-python/numpy-1.11.2-r1::gentoo'
Portage 2.3.0 (python 3.4.5-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.22-r4, 4.4.6-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.4.6-gentoo-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.2
KiB Mem:     4043380 total,   3664116 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sat, 03 Dec 2016 00:45:01 +0000
sh bash 4.3_p48
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p48::gentoo
dev-lang/perl:            5.22.2::gentoo
dev-lang/python:          2.7.12::gentoo, 3.4.5::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.22.4::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r4::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS=""
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx mmxext modules multilib ncurses nls nptl openmp pam pcre readline seccomp session sse sse2 ssl tcpd unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

localhost ~ # emerge -pqv '=dev-python/numpy-1.11.2-r1::gentoo'
[ebuild  N    ] dev-python/numpy-1.11.2-r1  USE="lapack {test} -doc" PYTHON_TARGETS="python2_7 python3_4 -python3_5" 

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Comment 2 eroen 2016-12-04 17:34:50 UTC
Same issue with scipy:

 * python2_7: running distutils-r1_run_phase python_test
/usr/bin/python2.7 setup.py egg_info --egg-base=/var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/test/lib install --home=/var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/test --install-lib=/var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/test/lib --install-scripts=/var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/test/scripts config_fc --noopt --noarch
usage: setup.py [global_opts] cmd1 [cmd1_opts] [cmd2 [cmd2_opts] ...]
   or: setup.py --help [cmd1 cmd2 ...]
   or: setup.py --help-commands
   or: setup.py cmd --help

error: invalid command 'config_fc'
 * ERROR: sci-libs/scipy-0.18.1::gentoo failed (test phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  115:  Called src_test
 *   environment, line 4362:  Called distutils-r1_src_test
 *   environment, line 1332:  Called _distutils-r1_run_foreach_impl 'python_test'
 *   environment, line  384:  Called python_foreach_impl 'distutils-r1_run_phase' 'python_test'
 *   environment, line 3765:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test'
 *   environment, line 2822:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test'
 *   environment, line 2820:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test'
 *   environment, line  854:  Called distutils-r1_run_phase 'python_test'
 *   environment, line 1264:  Called python_test
 *   environment, line 4158:  Called distutils_install_for_testing 'config_fc' '--noopt' '--noarch'
 *   environment, line 1352:  Called esetup.py 'egg_info' '--egg-base=/var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/test/lib' 'install' '--home=/var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/test' '--install-lib=/var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/test/lib' '--install-scripts=/var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/test/scripts' 'config_fc' '--noopt' '--noarch'
 *   environment, line 1830:  Called die
 * The specific snippet of code:
 *       "${@}" || die "${die_args[@]}";
Comment 3 Benda Xu gentoo-dev 2020-01-27 04:39:09 UTC
Thanks!  With scipy-1.4.1 in tree, all the tests can pass.  Please retry.