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Bug 600826 - sci-biology/bioperl: Package uses dev-perl/XML-Twig and makes no clear statement regarding handling of external entities (CVE-2016-9180)
Summary: sci-biology/bioperl: Package uses dev-perl/XML-Twig and makes no clear statem...
Status: RESOLVED WONTFIX
Alias: None
Product: Gentoo Security
Classification: Unclassified
Component: Vulnerabilities (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Security
URL:
Whiteboard: B3 [upstream?]
Keywords:
Depends on:
Blocks: 600818
  Show dependency tree
 
Reported: 2016-11-25 17:27 UTC by Thomas Deutschmann (RETIRED)
Modified: 2019-08-25 01:34 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


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Description Thomas Deutschmann (RETIRED) gentoo-dev 2016-11-25 17:27:59 UTC
It is suspected that this package is vulnerable to a security vulnerability due to expanding of malicious entities via dev-perl/XML-Twig. As such we ask maintainers with packages suspected to be vulnerable to verify if the package is (or have been) affected. 

Please see the information contained in the tracker bug 600818.


# grep -Fr 'Twig->new' /var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/Bio/Phenotype/MeSH/Twig.pm:  my $twig = Bio::Phenotype::MeSH::Twig->new();
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/Bio/DB/Taxonomy/entrez.pm:                my $twig = XML::Twig->new;
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/Bio/DB/Taxonomy/entrez.pm:        my $twig = XML::Twig->new;
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/Bio/DB/Taxonomy/entrez.pm:        my $twig = XML::Twig->new;
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/Bio/DB/MeSH.pm:        my $twig = Bio::Phenotype::MeSH::Twig->new(-parent => $parent);
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/Bio/DB/Biblio/eutils.pm:    $self->twig(XML::Twig->new());
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/scripts/taxa/taxid4species.PLS:my $t = XML::Twig->new();
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/examples/biblio/biblio-eutils-example.pl:my $parser = XML::Twig->new(twig_roots => {"ArticleTitle" => \&print_title} );
/var/tmp/portage/sci-biology/bioperl-1.6.9/work/BioPerl-1.6.901/t/Phenotype/MeSH.t:ok my $twig = Bio::Phenotype::MeSH::Twig->new(-verbose =>$verbose);