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Bug 599788 - dev-libs/boost relocation R_X86_64_TP OFF32 against `_ZZN12_GLOBAL__N_110get_globalEvE6global' can not be used when making a shared object; recompile with -fPIC
Summary: dev-libs/boost relocation R_X86_64_TP OFF32 against `_ZZN12_GLOBAL__N_110get...
Status: RESOLVED WONTFIX
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: David Seifert
URL:
Whiteboard:
Keywords:
: 597694 599784 (view as bug list)
Depends on:
Blocks:
 
Reported: 2016-11-15 13:30 UTC by Anton Kochkov
Modified: 2019-04-19 09:46 UTC (History)
3 users (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
full build log (boost-build.log.gz,7.20 KB, application/gzip)
2016-11-15 13:30 UTC, Anton Kochkov
Details

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Description Anton Kochkov 2016-11-15 13:30:13 UTC
Created attachment 453386 [details]
full build log

/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/libstdc++.a(eh_globals.o): relocation R_X86_64_TP
OFF32 against `_ZZN12_GLOBAL__N_110get_globalEvE6global' can not be used when making a shared object; recompile with -fPIC
/usr/lib/libstdc++.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status

emerge --info

Portage 2.3.2 (python 2.7.12-final-0, hardened/linux/amd64/no-multilib, gcc-5.3.0, glibc-2.23-r3, 3.3.2-hardened x86_64)
=================================================================
System uname: Linux-3.3.2-hardened-x86_64-Intel-R-_Core-TM-_i7_CPU_930_@_2.80GHz-with-gentoo-2.3
KiB Mem:     8167824 total,   3731020 free
KiB Swap:   16016792 total,  15839100 free
Timestamp of repository gentoo: Tue, 15 Nov 2016 08:45:01 +0000
sh bash 4.4_p5
ld GNU ld (Gentoo 2.26.1 p1.0) 2.26.1
app-shells/bash:          4.4_p5::gentoo
dev-java/java-config:     2.2.0-r3::gentoo
dev-lang/perl:            5.24.0-r2::gentoo
dev-lang/python:          2.7.12::gentoo, 3.5.2::gentoo
dev-util/cmake:           3.7.0::gentoo
dev-util/pkgconfig:       0.29.1::gentoo
sys-apps/baselayout:      2.3::gentoo
sys-apps/openrc:          0.22.3-r1::gentoo
sys-apps/sandbox:         2.11-r2::gentoo
sys-devel/autoconf:       2.69-r2::gentoo
sys-devel/automake:       1.11.6-r2::gentoo, 1.13.4-r1::gentoo, 1.14.1-r1::gentoo, 1.15-r2::gentoo
sys-devel/binutils:       2.26.1::gentoo, 2.27::gentoo
sys-devel/gcc:            5.3.0::gentoo, 5.4.0::gentoo
sys-devel/gcc-config:     1.8-r1::gentoo
sys-devel/libtool:        2.4.6-r2::gentoo
sys-devel/make:           4.2.1::gentoo
sys-kernel/linux-headers: 4.8::gentoo (virtual/os-headers)
sys-libs/glibc:           2.23-r3::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.us.gentoo.org/gentoo-portage
    priority: -1000

x-portage
    location: /usr/local/portage
    masters: gentoo
    priority: 0

gentoo-xvilka
    location: /var/lib/layman/gentoo-xvilka
    masters: gentoo
    priority: 1

godin
    location: /var/lib/layman/godin
    masters: gentoo
    priority: 50

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* -@EULA dlj-1.1"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-march=core2 -mtune=generic -O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt /var/bind /var/qmail/alias /var/qmail/control /var/spool/munin-async/.ssh /var/vpopmail/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/php/apache2-php5.6/ext-active/ /etc/php/cgi-php5.6/ext-active/ /etc/php/cli-php5.6/ext-active/ /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/texmf/web2c"
CXXFLAGS="-march=core2 -mtune=generic -O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS="-j9"
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bzip2 cli cracklib crypt cvs cxx dri gdbm git gnutls hardened iconv ipv6 justify lighttpd mercurial mmx mmxext modules ncurses nls nptl openmp pam pax_kernel pcre perl php pie postgresql python readline sbcl seccomp session sse sse2 sse4 ssl ssp ssse3 subversion tcpd unicode urandom xattr xml xmlrpc xsl xtpax zlib" ABI_X86="64" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" CPU_FLAGS_X86="mmx mmxext sse sse2" ELIBC="glibc" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_5" RUBY_TARGETS="ruby21 ruby22" USERLAND="GNU" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON
Comment 1 Anton Kochkov 2016-11-15 13:31:29 UTC
Looks related: https://bugs.gentoo.org/show_bug.cgi?id=597694
Comment 2 Anton Kochkov 2016-11-15 13:40:08 UTC
Same in sci-libs/scipy:

/scipy-0.18.1/work/scipy-0.18.1-python2_7/build/temp.linux-x86_64-2.7 -lpython2.7 -o /var/tmp/portage/sci-libs/scipy-0.18.1/work/scipy-0.
18.1-python2_7/build/lib/scipy/interpolate/_interpolate.so
/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libstdc++.a(eh_globals.o): relocation R_X86_64_
TPOFF32 against `_ZZN12_GLOBAL__N_110get_globalEvE6global' can not be used when making a shared object; recompile with -fPIC
/usr/lib64/libstdc++.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libstdc++.a(eh_globals.o): relocation R_X86_64_
TPOFF32 against `_ZZN12_GLOBAL__N_110get_globalEvE6global' can not be used when making a shared object; recompile with -fPIC
/usr/lib64/libstdc++.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
Comment 3 Anton Kochkov 2016-11-15 13:50:56 UTC
Same in sys-cluster/openmpi:

/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib64/libstdc++.a(eh_globals.o): relocation R_X86_64_TPOFF32 against `_ZZN12_GLOBAL__N_110get_globalEvE6global' can not be used when making a shared object; recompile with -fPIC
/usr/lib64/libstdc++.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
Comment 4 Anton Kochkov 2016-11-15 13:55:04 UTC
Same in net-libs/gnutls:

libtool: link: x86_64-pc-linux-gnu-g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../lib64/crti.o /us
r/lib/gcc/x86_64-pc-linux-gnu/5.3.0/crtbeginS.o  .libs/libgnutlsxx_la-gnutlsxx.o   -Wl,-rpath -Wl,/var/tmp/portage/net-libs/gnutls-3.4.16
/work/gnutls-3.4.16-abi_x86_64.amd64/lib/.libs -Wl,--as-needed ./.libs/libgnutls.so -L/usr/lib64 -lz /usr/lib64/libtasn1.so -lnettle -lho
gweed -lgmp -L/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../lib64 -L/lib/../lib64 -L/usr/li
b/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../..
 /usr/lib/../lib64/libstdc++.a -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/..
/../../../lib64/crtn.o  -march=core2 -mtune=generic -O2 -Wl,-O1   -Wl,-soname -Wl,libgnutlsxx.so.28 -o .libs/libgnutlsxx.so.28.1.0
/usr/lib/gcc/x86_64-pc-linux-gnu/5.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: /usr/lib/../lib64/libstdc++.a(eh_globals.o): relocation R_
X86_64_TPOFF32 against `_ZZN12_GLOBAL__N_110get_globalEvE6global' can not be used when making a shared object; recompile with -fPIC
/usr/lib/../lib64/libstdc++.a: error adding symbols: Bad value
collect2: error: ld returned 1 exit status
make[4]: *** [Makefile:1663: libgnutlsxx.la] Error 1
Comment 5 Anton Kochkov 2016-11-15 14:01:27 UTC
Found the reason - installed dev-lang/gnat-gcc-4.9.3, which provided this /usr/lib/libstdc++.a. All those bugs were solved after removing gnat-gcc. Still cannot be closed for now, since installing gnat-gcc brings problem back.
Comment 6 Anton Kochkov 2016-11-25 13:31:33 UTC
Added Ada team, since this bug is only presented when dev-lang/gnat-gcc-4.9.3 is installed.
Comment 7 Alexis Ballier gentoo-dev 2016-12-01 14:26:10 UTC
*** Bug 599784 has been marked as a duplicate of this bug. ***
Comment 8 Dirkjan Ochtman (RETIRED) gentoo-dev 2018-06-06 09:21:43 UTC
*** Bug 597694 has been marked as a duplicate of this bug. ***
Comment 9 David Seifert gentoo-dev 2019-04-19 09:46:21 UTC
Sorry, ada is a massive PITA and pretty much unsupported on Gentoo right now.