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Bug 597726 - dev-python/jupyter_core-4.2.0 fails tests - ImportError: No module named jupyter_core
Summary: dev-python/jupyter_core-4.2.0 fails tests - ImportError: No module named jupy...
Status: RESOLVED OBSOLETE
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Related Packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2016-10-21 20:27 UTC by eroen
Modified: 2019-07-30 07:48 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
build.log (build.log,36.74 KB, text/plain)
2016-10-21 20:27 UTC, eroen
Details

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Description eroen 2016-10-21 20:27:22 UTC
Created attachment 450960 [details]
build.log

=================================== FAILURES ===================================
_______________________________ test_not_on_path _______________________________

tmpdir = local('/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_not_on_path0')

    def test_not_on_path(tmpdir):
        a = tmpdir.mkdir("a")
        jupyter = a.join('jupyter')
        jupyter.write(
            'from jupyter_core import command; command.main()'
        )
        jupyter.chmod(0o700)
        witness_cmd = 'jupyter-witness'
        if sys.platform == 'win32':
            witness_cmd += '.py'
        witness = a.join(witness_cmd)
        witness.write('#!%s\n%s\n' % (sys.executable, 'print("WITNESS ME")'))
        witness.chmod(0o700)
>       out = check_output([sys.executable, str(jupyter), 'witness'], env={'PATH': ''})

jupyter_core/tests/test_command.py:116: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

popenargs = (['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_not_on_path0/a/jupyter', 'witness'],)
kwargs = {'env': {'PATH': ''}}
process = <subprocess.Popen object at 0x7faa7e43a750>, output = ''
unused_err = None, retcode = 1
cmd = ['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_not_on_path0/a/jupyter', 'witness']

    def check_output(*popenargs, **kwargs):
        r"""Run command with arguments and return its output as a byte string.
    
        If the exit code was non-zero it raises a CalledProcessError.  The
        CalledProcessError object will have the return code in the returncode
        attribute and output in the output attribute.
    
        The arguments are the same as for the Popen constructor.  Example:
    
        >>> check_output(["ls", "-l", "/dev/null"])
        'crw-rw-rw- 1 root root 1, 3 Oct 18  2007 /dev/null\n'
    
        The stdout argument is not allowed as it is used internally.
        To capture standard error in the result, use stderr=STDOUT.
    
        >>> check_output(["/bin/sh", "-c",
        ...               "ls -l non_existent_file ; exit 0"],
        ...              stderr=STDOUT)
        'ls: non_existent_file: No such file or directory\n'
        """
        if 'stdout' in kwargs:
            raise ValueError('stdout argument not allowed, it will be overridden.')
        process = Popen(stdout=PIPE, *popenargs, **kwargs)
        output, unused_err = process.communicate()
        retcode = process.poll()
        if retcode:
            cmd = kwargs.get("args")
            if cmd is None:
                cmd = popenargs[0]
>           raise CalledProcessError(retcode, cmd, output=output)
E           CalledProcessError: Command '['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_not_on_path0/a/jupyter', 'witness']' returned non-zero exit status 1

/usr/lib64/python2.7/subprocess.py:573: CalledProcessError
----------------------------- Captured stderr call -----------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_not_on_path0/a/jupyter", line 1, in <module>
    from jupyter_core import command; command.main()
ImportError: No module named jupyter_core
______________________________ test_path_priority ______________________________

tmpdir = local('/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_path_priority0')

    def test_path_priority(tmpdir):
        a = tmpdir.mkdir("a")
        jupyter = a.join('jupyter')
        jupyter.write(
            'from jupyter_core import command; command.main()'
        )
        jupyter.chmod(0o700)
        witness_cmd = 'jupyter-witness'
        if sys.platform == 'win32':
            witness_cmd += '.py'
        witness_a = a.join(witness_cmd)
        witness_a.write('#!%s\n%s\n' % (sys.executable, 'print("WITNESS A")'))
        witness_a.chmod(0o700)
    
        b = tmpdir.mkdir("b")
        witness_b = b.join(witness_cmd)
        witness_b.write('#!%s\n%s\n' % (sys.executable, 'print("WITNESS B")'))
        witness_b.chmod(0o700)
    
>       out = check_output([sys.executable, str(jupyter), 'witness'], env={'PATH': str(b)})

jupyter_core/tests/test_command.py:139: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

popenargs = (['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_path_priority0/a/jupyter', 'witness'],)
kwargs = {'env': {'PATH': '/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_path_priority0/b'}}
process = <subprocess.Popen object at 0x7faa7e713fd0>, output = ''
unused_err = None, retcode = 1
cmd = ['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_path_priority0/a/jupyter', 'witness']

    def check_output(*popenargs, **kwargs):
        r"""Run command with arguments and return its output as a byte string.
    
        If the exit code was non-zero it raises a CalledProcessError.  The
        CalledProcessError object will have the return code in the returncode
        attribute and output in the output attribute.
    
        The arguments are the same as for the Popen constructor.  Example:
    
        >>> check_output(["ls", "-l", "/dev/null"])
        'crw-rw-rw- 1 root root 1, 3 Oct 18  2007 /dev/null\n'
    
        The stdout argument is not allowed as it is used internally.
        To capture standard error in the result, use stderr=STDOUT.
    
        >>> check_output(["/bin/sh", "-c",
        ...               "ls -l non_existent_file ; exit 0"],
        ...              stderr=STDOUT)
        'ls: non_existent_file: No such file or directory\n'
        """
        if 'stdout' in kwargs:
            raise ValueError('stdout argument not allowed, it will be overridden.')
        process = Popen(stdout=PIPE, *popenargs, **kwargs)
        output, unused_err = process.communicate()
        retcode = process.poll()
        if retcode:
            cmd = kwargs.get("args")
            if cmd is None:
                cmd = popenargs[0]
>           raise CalledProcessError(retcode, cmd, output=output)
E           CalledProcessError: Command '['/usr/bin/python2.7', '/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_path_priority0/a/jupyter', 'witness']' returned non-zero exit status 1

/usr/lib64/python2.7/subprocess.py:573: CalledProcessError
----------------------------- Captured stderr call -----------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/jupyter_core-4.2.0/temp/pytest-of-portage/pytest-0/test_path_priority0/a/jupyter", line 1, in <module>
    from jupyter_core import command; command.main()
ImportError: No module named jupyter_core
===================== 2 failed, 38 passed in 1.01 seconds ======================
 * ERROR: dev-python/jupyter_core-4.2.0::gentoo failed (test phase):
 *   (no error message)
 * 
 * Call stack:
 *     ebuild.sh, line  115:  Called src_test
 *   environment, line 2619:  Called distutils-r1_src_test
 *   environment, line  805:  Called _distutils-r1_run_foreach_impl 'python_test'
 *   environment, line  296:  Called python_foreach_impl 'distutils-r1_run_phase' 'python_test'
 *   environment, line 2124:  Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test'
 *   environment, line 1428:  Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_test'
 *   environment, line 1426:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_test'
 *   environment, line  496:  Called distutils-r1_run_phase 'python_test'
 *   environment, line  737:  Called python_test
 *   environment, line 2498:  Called die
 * The specific snippet of code:
 *       py.test jupyter_core || die
Comment 1 eroen 2016-10-21 20:28:06 UTC
localhost ~ # emerge --info '=dev-python/jupyter_core-4.2.0::gentoo'
Portage 2.3.0 (python 3.4.3-final-0, default/linux/amd64/13.0, gcc-4.9.3, glibc-2.22-r4, 4.4.6-gentoo x86_64)
=================================================================
                         System Settings
=================================================================
System uname: Linux-4.4.6-gentoo-x86_64-Intel-R-_Core-TM-_i5-2520M_CPU_@_2.50GHz-with-gentoo-2.2
KiB Mem:     4043380 total,   3025264 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Fri, 21 Oct 2016 00:45:01 +0000
sh bash 4.3_p48
ld GNU ld (Gentoo 2.25.1 p1.1) 2.25.1
app-shells/bash:          4.3_p48::gentoo
dev-lang/perl:            5.22.2::gentoo
dev-lang/python:          2.7.10-r1::gentoo, 3.4.3-r1::gentoo
dev-util/pkgconfig:       0.28-r2::gentoo
sys-apps/baselayout:      2.2::gentoo
sys-apps/openrc:          0.21.7::gentoo
sys-apps/sandbox:         2.10-r1::gentoo
sys-devel/autoconf:       2.69::gentoo
sys-devel/automake:       1.14.1::gentoo, 1.15::gentoo
sys-devel/binutils:       2.25.1-r1::gentoo
sys-devel/gcc:            4.9.3::gentoo
sys-devel/gcc-config:     1.7.3::gentoo
sys-devel/libtool:        2.4.6::gentoo
sys-devel/make:           4.1-r1::gentoo
sys-kernel/linux-headers: 4.3::gentoo (virtual/os-headers)
sys-libs/glibc:           2.22-r4::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000

ACCEPT_KEYWORDS="amd64"
ACCEPT_LICENSE="* -@EULA"
CBUILD="x86_64-pc-linux-gnu"
CFLAGS="-O2 -pipe"
CHOST="x86_64-pc-linux-gnu"
CONFIG_PROTECT="/etc"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe"
DISTDIR="/usr/portage/distfiles"
FCFLAGS="-O2 -pipe"
FEATURES="assume-digests binpkg-logs config-protect-if-modified distlocks ebuild-locks fixlafiles merge-sync news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe"
GENTOO_MIRRORS="http://distfiles.gentoo.org"
LDFLAGS="-Wl,-O1 -Wl,--as-needed"
MAKEOPTS=""
PKGDIR="/usr/portage/packages"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
USE="acl amd64 berkdb bindist bzip2 cli cracklib crypt cxx dri fortran gdbm iconv ipv6 mmx mmxext modules multilib ncurses nls nptl openmp pam pcre readline seccomp session sse sse2 ssl tcpd unicode xattr zlib" ABI_X86="64" ALSA_CARDS="ali5451 als4000 atiixp atiixp-modem bt87x ca0106 cmipci emu10k1x ens1370 ens1371 es1938 es1968 fm801 hda-intel intel8x0 intel8x0m maestro3 trident usb-audio via82xx via82xx-modem ymfpci" APACHE2_MODULES="authn_core authz_core socache_shmcb unixd actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias" CALLIGRA_FEATURES="kexi words flow plan sheets stage tables krita karbon braindump author" CAMERAS="ptp2" COLLECTD_PLUGINS="df interface irq load memory rrdtool swap syslog" ELIBC="glibc" GPSD_PROTOCOLS="ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ublox ubx" INPUT_DEVICES="keyboard mouse evdev" KERNEL="linux" LCD_DEVICES="bayrad cfontz cfontz633 glk hd44780 lb216 lcdm001 mtxorb ncurses text" LIBREOFFICE_EXTENSIONS="presenter-console presenter-minimizer" OFFICE_IMPLEMENTATION="libreoffice" PHP_TARGETS="php5-6" PYTHON_SINGLE_TARGET="python2_7" PYTHON_TARGETS="python2_7 python3_4" RUBY_TARGETS="ruby20 ruby21" USERLAND="GNU" VIDEO_CARDS="amdgpu fbdev intel nouveau radeon radeonsi vesa dummy v4l" XTABLES_ADDONS="quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account"
Unset:  CC, CPPFLAGS, CTARGET, CXX, EMERGE_DEFAULT_OPTS, INSTALL_MASK, LANG, LC_ALL, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, USE_PYTHON

localhost ~ # emerge -pqv '=dev-python/jupyter_core-4.2.0::gentoo' 
[ebuild  N    ] dev-python/jupyter_core-4.2.0  USE="{test} -doc" PYTHON_TARGETS="python2_7 python3_4 (-python3_3) -python3_5" 

 * IMPORTANT: 11 news items need reading for repository 'gentoo'.
 * Use eselect news read to view new items.
Comment 2 eroen 2016-10-21 20:29:36 UTC
Test suite passes if dev-python/jupyter_core-4.2.0 is already installed.
Comment 3 Marius Brehler 2016-10-24 06:11:23 UTC
We already had some trouble with the witness command while bumping to jupyter_core-4.1.0 (https://github.com/jupyter/jupyter_core/issues/78). Usually, the 'distutils_install_for_testing' should install jupyter_core into the test environment which should be sufficient. Since I have to use jupyter for "production" I will have to setup a new chroot without jupyter installed. Thus any support is appreciated to solve this issue a little faster.
Comment 4 Marius Brehler 2019-07-30 07:48:56 UTC
Closing this bug, as jupyter_core-4.2.0 is not in the tree any more. The same issue arises for jupyter_core-4.4.0, documented in bug #649538